5fxl - Revision history

OCA at 13:30, 26 July 2023

2023-07-26T13:30:44Z

←Older revision		Revision as of 13:30, 26 July 2023
Line 3:		Line 3:
	<StructureSection load='5fxl' size='340' side='right'caption='[[5fxl]], [[Resolution\|resolution]] 1.78Å' scene=''>		<StructureSection load='5fxl' size='340' side='right'caption='[[5fxl]], [[Resolution\|resolution]] 1.78Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5fxl]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FXL OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5FXL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5fxl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FXL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FXL FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>~~, ~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.78Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[5fxm\|5fxm]], [[5fxn\|5fxn]]~~<~~/td~~></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<~~tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fxl OCA], [https://pdbe.org/5fxl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fxl RCSB], [https://www.ebi.ac.uk/pdbsum/5fxl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fxl ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5fxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fxl OCA], [~~http~~://pdbe.org/5fxl PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5fxl RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5fxl PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5fxl ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/TRY1_BOVIN TRY1_BOVIN]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 27:		Line 28:
	[[Category: Bos taurus]]		[[Category: Bos taurus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Trypsin]]~~	+	[[Category: Bowler MW]]
-	[[Category: Bowler~~, M W~~]]	+	[[Category: Nurizzo D]]
-	[[Category: Nurizzo, D]]	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 07:41, 6 May 2020

2020-05-06T07:41:40Z

←Older revision		Revision as of 07:41, 6 May 2020
Line 1:		Line 1:

	==Structure of trypsin solved by MR from data collected by Direct Data Collection (DDC) using the ESRF RoboDiff goniometer==		==Structure of trypsin solved by MR from data collected by Direct Data Collection (DDC) using the ESRF RoboDiff goniometer==
-	<StructureSection load='5fxl' size='340' side='right' caption='[[5fxl]], [[Resolution\|resolution]] 1.78Å' scene=''>	+	<StructureSection load='5fxl' size='340' side='right'caption='[[5fxl]], [[Resolution\|resolution]] 1.78Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5fxl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FXL OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5FXL FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5fxl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FXL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5FXL FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fxm\|5fxm]], [[5fxn\|5fxn]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fxm\|5fxm]], [[5fxn\|5fxn]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5fxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fxl OCA], [http://pdbe.org/5fxl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fxl RCSB], [http://www.ebi.ac.uk/pdbsum/5fxl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fxl ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5fxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fxl OCA], [http://pdbe.org/5fxl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fxl RCSB], [http://www.ebi.ac.uk/pdbsum/5fxl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fxl ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 18:		Line 18:
	</div>		</div>
	<div class="pdbe-citations 5fxl" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5fxl" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Trypsin 3D structures\|Trypsin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 23:		Line 26:
	</StructureSection>		</StructureSection>
	[[Category: Bos taurus]]		[[Category: Bos taurus]]
		+	[[Category: Large Structures]]
	[[Category: Trypsin]]		[[Category: Trypsin]]
	[[Category: Bowler, M W]]		[[Category: Bowler, M W]]
	[[Category: Nurizzo, D]]		[[Category: Nurizzo, D]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 05:22, 9 September 2016

2016-09-09T05:22:49Z

←Older revision		Revision as of 05:22, 9 September 2016
Line 7:		Line 7:
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fxm\|5fxm]], [[5fxn\|5fxn]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fxm\|5fxm]], [[5fxn\|5fxn]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fxl OCA], [http://pdbe.org/5fxl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fxl RCSB], [http://www.ebi.ac.uk/pdbsum/5fxl PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fxl OCA], [http://pdbe.org/5fxl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fxl RCSB], [http://www.ebi.ac.uk/pdbsum/5fxl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fxl ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Automation of the mounting of cryocooled samples is now a feature of the majority of beamlines dedicated to macromolecular crystallography (MX). Robotic sample changers have been developed over many years, with the latest designs increasing capacity, reliability and speed. Here, the development of a new sample changer deployed at the ESRF beamline MASSIF-1 (ID30A-1), based on an industrial six-axis robot, is described. The device, named RoboDiff, includes a high-capacity dewar, acts as both a sample changer and a high-accuracy goniometer, and has been designed for completely unattended sample mounting and diffraction data collection. This aim has been achieved using a high level of diagnostics at all steps of the process from mounting and characterization to data collection. The RoboDiff has been in service on the fully automated endstation MASSIF-1 at the ESRF since September 2014 and, at the time of writing, has processed more than 20 000 samples completely automatically.
		+
		+	RoboDiff: combining a sample changer and goniometer for highly automated macromolecular crystallography experiments.,Nurizzo D, Bowler MW, Caserotto H, Dobias F, Giraud T, Surr J, Guichard N, Papp G, Guijarro M, Mueller-Dieckmann C, Flot D, McSweeney S, Cipriani F, Theveneau P, Leonard GA Acta Crystallogr D Struct Biol. 2016 Aug;72(Pt 8):966-75. doi:, 10.1107/S205979831601158X. Epub 2016 Jul 27. PMID:27487827<ref>PMID:27487827</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5fxl" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 03:51, 11 May 2016

2016-05-11T03:51:01Z

←Older revision		Revision as of 03:51, 11 May 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 5fxl is ON HOLD~~	+	==Structure of trypsin solved by MR from data collected by Direct Data Collection (DDC) using the ESRF RoboDiff goniometer==
-		+	<StructureSection load='5fxl' size='340' side='right' caption='[[5fxl]], [[Resolution\|resolution]] 1.78Å' scene=''>
-	~~Authors: Bowler, M.W., Nurizzo, D.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5fxl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FXL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FXL FirstGlance]. <br>
-	~~Description:~~ Structure of trypsin solved by MR from data collected by Direct Data Collection (DDC) using the ESRF RoboDiff goniometer	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5fxm\|5fxm]], [[5fxn\|5fxn]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Trypsin Trypsin], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.4 3.4.21.4] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fxl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fxl OCA], [http://pdbe.org/5fxl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fxl RCSB], [http://www.ebi.ac.uk/pdbsum/5fxl PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Bos taurus]]
		+	[[Category: Trypsin]]
		+	[[Category: Bowler, M W]]
	[[Category: Nurizzo, D]]		[[Category: Nurizzo, D]]
-	[[Category: ~~Bowler, M.W~~]]	+	[[Category: Hydrolase]]

OCA: Protected "5fxl" [edit=sysop:move=sysop]

2016-03-10T00:54:09Z

Protected "5fxl" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:54, 10 March 2016

OCA: New page: '''Unreleased structure''' The entry 5fxl is ON HOLD Authors: Bowler, M.W., Nurizzo, D. Description: Structure of trypsin solved by MR from data collected by Direct Data Collection (DD...

2016-03-10T00:54:08Z

New page: '''Unreleased structure''' The entry 5fxl is ON HOLD Authors: Bowler, M.W., Nurizzo, D. Description: Structure of trypsin solved by MR from data collected by Direct Data Collection (DD...

New page

'''Unreleased structure'''

The entry 5fxl is ON HOLD

Authors: Bowler, M.W., Nurizzo, D.

Description: Structure of trypsin solved by MR from data collected by Direct Data Collection (DDC) using the ESRF RoboDiff goniometer
[[Category: Unreleased Structures]]
[[Category: Nurizzo, D]]
[[Category: Bowler, M.W]]