5g49 - Revision history

OCA at 13:38, 26 July 2023

2023-07-26T13:38:16Z

←Older revision		Revision as of 13:38, 26 July 2023
Line 3:		Line 3:
	<StructureSection load='5g49' size='340' side='right'caption='[[5g49]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='5g49' size='340' side='right'caption='[[5g49]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5g49]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Arath Arath~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5G49 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5G49 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5g49]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5G49 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5G49 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5g49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5g49 OCA], [~~http~~://pdbe.org/5g49 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5g49 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5g49 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5g49 ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5g49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5g49 OCA], [https://pdbe.org/5g49 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5g49 RCSB], [https://www.ebi.ac.uk/pdbsum/5g49 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5g49 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/NFYB6_ARATH NFYB6_ARATH]] Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway.<ref>PMID:12509518</ref> <ref>PMID:17322342</ref> ~~[[http://www.uniprot.org/uniprot/NFYC3_ARATH NFYC3_ARATH]] Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.~~	+	[https://www.uniprot.org/uniprot/NFYB6_ARATH NFYB6_ARATH] Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway.<ref>PMID:12509518</ref> <ref>PMID:17322342</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 25:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Arath~~]]	+	[[Category: Arabidopsis thaliana]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chaves-Sanjuan, A]]	+	[[Category: Chaves-Sanjuan A]]
-	[[Category: Gnesutta, N]]	+	[[Category: Gnesutta N]]
-	[[Category: Mantovani, R]]	+	[[Category: Mantovani R]]
-	[[Category: Nardini, M]]	+	[[Category: Nardini M]]
-	[[Category: Saad, D]]	+	[[Category: Saad D]]
-	~~[[Category: Ccaat box- binding transcription factor]]~~	+
-	~~[[Category: Histone-fold domain]]~~	+
-	~~[[Category: Nf-y]]~~	+
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transcription factor~~]]	+

OCA at 06:38, 13 May 2020

2020-05-13T06:38:27Z

←Older revision		Revision as of 06:38, 13 May 2020
Line 1:		Line 1:

	==Crystal structure of the Arabodopsis thaliana histone-fold dimer L1L NF-YC3==		==Crystal structure of the Arabodopsis thaliana histone-fold dimer L1L NF-YC3==
-	<StructureSection load='5g49' size='340' side='right' caption='[[5g49]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='5g49' size='340' side='right'caption='[[5g49]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5g49]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5G49 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5G49 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5g49]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5G49 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5G49 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5g49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5g49 OCA], [http://pdbe.org/5g49 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5g49 RCSB], [http://www.ebi.ac.uk/pdbsum/5g49 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5g49 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5g49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5g49 OCA], [http://pdbe.org/5g49 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5g49 RCSB], [http://www.ebi.ac.uk/pdbsum/5g49 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5g49 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 18:		Line 18:
	</div>		</div>
	<div class="pdbe-citations 5g49" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5g49" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Nuclear transcription factor Y\|Nuclear transcription factor Y]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Arath]]
		+	[[Category: Large Structures]]
	[[Category: Chaves-Sanjuan, A]]		[[Category: Chaves-Sanjuan, A]]
	[[Category: Gnesutta, N]]		[[Category: Gnesutta, N]]

OCA at 19:36, 9 December 2016

2016-12-09T19:36:12Z

←Older revision		Revision as of 19:36, 9 December 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5g49 is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Crystal structure of the Arabodopsis thaliana histone-fold dimer L1L NF-YC3==
		+	<StructureSection load='5g49' size='340' side='right' caption='[[5g49]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5g49]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5G49 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5G49 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5g49 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5g49 OCA], [http://pdbe.org/5g49 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5g49 RCSB], [http://www.ebi.ac.uk/pdbsum/5g49 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5g49 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/NFYB6_ARATH NFYB6_ARATH]] Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway.<ref>PMID:12509518</ref> <ref>PMID:17322342</ref> [[http://www.uniprot.org/uniprot/NFYC3_ARATH NFYC3_ARATH]] Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The structural analysis of the L1L/NF-YC3 histone dimer from A. thaliana shows that it can trimerize and bind to the CCAAT box. Specific sequence and structural features at the protein/DNA interface, in particular the presence of a Asp-His pair, help explain the molecular mechanisms of LEC1/L1L activity as a bona fide mammalian-like NF-YB.

-	~~Authors: Gnesutta~~, N., Saad, D., Chaves-Sanjuan, A., Mantovani, R., Nardini, M.	+	Crystal structure of the Arabidopsis thaliana L1L/NF-YC3 histone-fold dimer reveals specificities of the LEC1 family of NF-Y subunits in plants.,Gnesutta N, Saad D, Chaves-Sanjuan A, Mantovani R, Nardini M Mol Plant. 2016 Nov 18. pii: S1674-2052(16)30276-3. doi:, 10.1016/j.molp.2016.11.006. PMID:27871811<ref>PMID:27871811</ref>

-	~~Description: Crystal structure~~ of the ~~Arabodopsis thaliana histone~~-~~fold dimer L1L NF~~-~~YC3~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
		+	<div class="pdbe-citations 5g49" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Chaves-Sanjuan, A]]		[[Category: Chaves-Sanjuan, A]]
	[[Category: Gnesutta, N]]		[[Category: Gnesutta, N]]
		+	[[Category: Mantovani, R]]
	[[Category: Nardini, M]]		[[Category: Nardini, M]]
	[[Category: Saad, D]]		[[Category: Saad, D]]
-	[[Category: ~~Mantovani, R~~]]	+	[[Category: Ccaat box- binding transcription factor]]
		+	[[Category: Histone-fold domain]]
		+	[[Category: Nf-y]]
		+	[[Category: Transcription]]
		+	[[Category: Transcription factor]]

OCA: Protected "5g49" [edit=sysop:move=sysop]

2016-06-01T11:38:50Z

Protected "5g49" [edit=sysop:move=sysop]

←Older revision

Revision as of 11:38, 1 June 2016

OCA: New page: '''Unreleased structure''' The entry 5g49 is ON HOLD until Paper Publication Authors: Gnesutta, N., Saad, D., Chaves-Sanjuan, A., Mantovani, R., Nardini, M. Description: Crystal struct...

2016-06-01T11:38:49Z

New page: '''Unreleased structure''' The entry 5g49 is ON HOLD until Paper Publication Authors: Gnesutta, N., Saad, D., Chaves-Sanjuan, A., Mantovani, R., Nardini, M. Description: Crystal struct...

New page

'''Unreleased structure'''

The entry 5g49 is ON HOLD until Paper Publication

Authors: Gnesutta, N., Saad, D., Chaves-Sanjuan, A., Mantovani, R., Nardini, M.

Description: Crystal structure of the Arabodopsis thaliana histone-fold dimer L1L NF-YC3
[[Category: Unreleased Structures]]
[[Category: Chaves-Sanjuan, A]]
[[Category: Gnesutta, N]]
[[Category: Nardini, M]]
[[Category: Saad, D]]
[[Category: Mantovani, R]]