5gmq - Revision history

OCA at 11:36, 2 August 2023

2023-08-02T11:36:37Z

←Older revision		Revision as of 11:36, 2 August 2023
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	<StructureSection load='5gmq' size='340' side='right'caption='[[5gmq]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='5gmq' size='340' side='right'caption='[[5gmq]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5gmq]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~] and [~~http~~://en.wikipedia.org/wiki/~~Mers Mers~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GMQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5GMQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5gmq]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Middle_East_respiratory_syndrome-related_coronavirus Middle East respiratory syndrome-related coronavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GMQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GMQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.703Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5gmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gmq OCA], [~~http~~://pdbe.org/5gmq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5gmq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5gmq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5gmq ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5gmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gmq OCA], [https://pdbe.org/5gmq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5gmq RCSB], [https://www.ebi.ac.uk/pdbsum/5gmq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5gmq ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/SPIKE_MERS1 SPIKE_MERS1] Attaches the virion to the cell membrane by interacting with host receptor, initiating the infection (By similarity). Interacts with host DPP4 to mediate virla entry.[HAMAP-Rule:MF_04099]<ref>PMID:23486063</ref> Mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099] Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Mers~~]]	+	[[Category: Middle East respiratory syndrome-related coronavirus]]
-	[[Category: Chen, C]]	+	[[Category: Chen C]]
-	[[Category: Cui, S]]	+	[[Category: Cui S]]
-	[[Category: Gao~~, X P~~]]	+	[[Category: Gao XP]]
-	[[Category: Jin, Q]]	+	[[Category: Jin Q]]
-	[[Category: Wang~~, J M~~]]	+	[[Category: Wang JM]]
-	[[Category: Zou~~, T T]]~~	+	[[Category: Zou TT]]
-	~~[[Category: Viral protein-immune system complex~~]]	+

OCA at 06:46, 13 May 2020

2020-05-13T06:46:59Z

←Older revision		Revision as of 06:46, 13 May 2020
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	==Structure of MERS-CoV RBD in complex with a fully human antibody MCA1==		==Structure of MERS-CoV RBD in complex with a fully human antibody MCA1==
-	<StructureSection load='5gmq' size='340' side='right' caption='[[5gmq]], [[Resolution\|resolution]] 2.70Å' scene=''>	+	<StructureSection load='5gmq' size='340' side='right'caption='[[5gmq]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5gmq]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human] and [http://en.wikipedia.org/wiki/Mers Mers]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GMQ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5GMQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5gmq]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human] and [http://en.wikipedia.org/wiki/Mers Mers]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GMQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5GMQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5gmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gmq OCA], [http://pdbe.org/5gmq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gmq RCSB], [http://www.ebi.ac.uk/pdbsum/5gmq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gmq ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5gmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gmq OCA], [http://pdbe.org/5gmq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gmq RCSB], [http://www.ebi.ac.uk/pdbsum/5gmq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gmq ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 5gmq" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5gmq" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Sandbox 3001\|Sandbox 3001]]
		+	*[[Spike protein\|Spike protein]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Human]]		[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Mers]]		[[Category: Mers]]
	[[Category: Chen, C]]		[[Category: Chen, C]]

OCA at 11:33, 16 November 2017

2017-11-16T11:33:06Z

←Older revision		Revision as of 11:33, 16 November 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5gmq is ~~ON HOLD until Paper~~ Publication	+	==Structure of MERS-CoV RBD in complex with a fully human antibody MCA1==
		+	<StructureSection load='5gmq' size='340' side='right' caption='[[5gmq]], [[Resolution\|resolution]] 2.70Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5gmq]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human] and [http://en.wikipedia.org/wiki/Mers Mers]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GMQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GMQ FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5gmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5gmq OCA], [http://pdbe.org/5gmq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5gmq RCSB], [http://www.ebi.ac.uk/pdbsum/5gmq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5gmq ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Middle East respiratory syndrome coronavirus (MERS-CoV) infection in humans is highly lethal, with a fatality rate of 35%. New prophylactic and therapeutic strategies to combat human infections are urgently needed. We isolated a fully human neutralizing antibody, MCA1, from a human survivor. The antibody recognizes the receptor-binding domain of MERS-CoV S glycoprotein and interferes with the interaction between viral S and the human cellular receptor human dipeptidyl peptidase 4 (DPP4). To our knowledge, this study is the first to report a human neutralizing monoclonal antibody that completely inhibits MERS-CoV replication in common marmosets. Monotherapy with MCA1 represents a potential alternative treatment for human infections with MERS-CoV worthy of evaluation in clinical settings.

-	~~Authors~~:	+	Human Neutralizing Monoclonal Antibody Inhibition of Middle East Respiratory Syndrome Coronavirus Replication in the Common Marmoset.,Chen Z, Bao L, Chen C, Zou T, Xue Y, Li F, Lv Q, Gu S, Gao X, Cui S, Wang J, Qin C, Jin Q J Infect Dis. 2017 Jun 15;215(12):1807-1815. doi: 10.1093/infdis/jix209. PMID:28472421<ref>PMID:28472421</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5gmq" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Human]]
		+	[[Category: Mers]]
		+	[[Category: Chen, C]]
		+	[[Category: Cui, S]]
		+	[[Category: Gao, X P]]
		+	[[Category: Jin, Q]]
		+	[[Category: Wang, J M]]
		+	[[Category: Zou, T T]]
		+	[[Category: Viral protein-immune system complex]]

OCA at 12:25, 2 November 2016

2016-11-02T12:25:18Z

←Older revision		Revision as of 12:25, 2 November 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5gmq is ON HOLD	+	The entry 5gmq is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5gmq" [edit=sysop:move=sysop]

2016-07-26T09:47:43Z

Protected "5gmq" [edit=sysop:move=sysop]

←Older revision

Revision as of 09:47, 26 July 2016

OCA: New page: '''Unreleased structure''' The entry 5gmq is ON HOLD Authors: Description: Category: Unreleased Structures

2016-07-26T09:47:41Z

New page: '''Unreleased structure''' The entry 5gmq is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5gmq is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]