5guj - Revision history

OCA at 11:43, 2 August 2023

2023-08-02T11:43:00Z

←Older revision		Revision as of 11:43, 2 August 2023
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	<StructureSection load='5guj' size='340' side='right'caption='[[5guj]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='5guj' size='340' side='right'caption='[[5guj]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5guj]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Bacsu Bacsu~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GUJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5GUJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5guj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GUJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5GUJ FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[5gum\|5gum]]</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">dnaG, dnaE, BSU25210 ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=~~5&~~id=224308 BACSU])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5guj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5guj OCA], [https://pdbe.org/5guj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5guj RCSB], [https://www.ebi.ac.uk/pdbsum/5guj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5guj ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5guj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5guj OCA], [~~http~~://pdbe.org/5guj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5guj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5guj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5guj ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/DNAG_BACSU DNAG_BACSU]] RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.[HAMAP-Rule:MF_00974]	+	[https://www.uniprot.org/uniprot/DNAG_BACSU DNAG_BACSU] RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.[HAMAP-Rule:MF_00974]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacsu~~]]	+	[[Category: Bacillus subtilis subsp. subtilis str. 168]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Liu, Z]]	+	[[Category: Liu Z]]
-	[[Category: Wang, G]]	+	[[Category: Wang G]]
-	[[Category: Zhou, Y]]	+	[[Category: Zhou Y]]
-	~~[[Category: Transferase~~]]	+

OCA at 06:43, 20 May 2020

2020-05-20T06:43:49Z

←Older revision		Revision as of 06:43, 20 May 2020
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	==Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation of full length DnaG==		==Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation of full length DnaG==
-	<StructureSection load='5guj' size='340' side='right' caption='[[5guj]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='5guj' size='340' side='right'caption='[[5guj]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5guj]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GUJ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5GUJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5guj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GUJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5GUJ FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5gum\|5gum]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5gum\|5gum]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5guj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5guj OCA], [http://pdbe.org/5guj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5guj RCSB], [http://www.ebi.ac.uk/pdbsum/5guj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5guj ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dnaG, dnaE, BSU25210 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 BACSU])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5guj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5guj OCA], [http://pdbe.org/5guj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5guj RCSB], [http://www.ebi.ac.uk/pdbsum/5guj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5guj ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	</div>		</div>
	<div class="pdbe-citations 5guj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5guj" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[RNA polymerase 3D structures\|RNA polymerase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacsu]]
		+	[[Category: Large Structures]]
	[[Category: Liu, Z]]		[[Category: Liu, Z]]
	[[Category: Wang, G]]		[[Category: Wang, G]]
	[[Category: Zhou, Y]]		[[Category: Zhou, Y]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 12:57, 19 April 2017

2017-04-19T12:57:07Z

←Older revision		Revision as of 12:57, 19 April 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5guj is ~~ON HOLD until Aug 29 2018~~	+	==Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation of full length DnaG==
		+	<StructureSection load='5guj' size='340' side='right' caption='[[5guj]], [[Resolution\|resolution]] 2.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5guj]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5GUJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5GUJ FirstGlance]. <br>
		+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5gum\|5gum]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5guj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5guj OCA], [http://pdbe.org/5guj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5guj RCSB], [http://www.ebi.ac.uk/pdbsum/5guj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5guj ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/DNAG_BACSU DNAG_BACSU]] RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.[HAMAP-Rule:MF_00974]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Bacterial primase initiates the repeated synthesis of short RNA primers that are extended by DNA polymerase to synthesize Okazaki fragments on the lagging strand at replication forks. It remains unclear how the enzyme recognizes specific initiation sites. In this study, the DnaG primase from Bacillus subtilis (BsuDnaG) was characterized and the crystal structure of the RNA polymerase domain (RPD) was determined. Structural comparisons revealed that the tethered zinc binding domain plays an important role in the interactions between primase and specific template sequence. Structural and biochemical data defined the ssDNA template binding surface as an L shape, and a model for the template ssDNA binding to primase is proposed. The flexibility of the DnaG primases from B. subtilis and G. stearothermophilus were compared, and the results implied that the intrinsic flexibility of the primase may facilitate the interactions between primase and various partners in the replisome. These results shed light on the mechanism by which DnaG recognizes the specific initiation site.

-	~~Authors: Zhou~~, Y~~.Q.~~, ~~Liu~~, Z~~.C.~~, ~~Wang~~, G.G.	+	Structural Insight into the Specific DNA Template Binding to DnaG primase in Bacteria.,Zhou Y, Luo H, Liu Z, Yang M, Pang X, Sun F, Wang G Sci Rep. 2017 Apr 6;7(1):659. doi: 10.1038/s41598-017-00767-8. PMID:28386108<ref>PMID:28386108</ref>

-	~~Description: Crystal structure~~ of the ~~Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation~~ of ~~full length DnaG~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
-	[[Category: Wang, G.G]]	+	<div class="pdbe-citations 5guj" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Liu~~, ~~Z.C~~]]	+	== References ==
-	[[Category: ~~Zhou, Y.Q~~]]	+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Liu, Z]]
		+	[[Category: Wang, G]]
		+	[[Category: Zhou, Y]]
		+	[[Category: Transferase]]

OCA at 09:08, 9 March 2017

2017-03-09T09:08:14Z

←Older revision		Revision as of 09:08, 9 March 2017
Line 7:		Line 7:
	Description: Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation of full length DnaG		Description: Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation of full length DnaG
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Zhou, Y.Q]]
	[[Category: Wang, G.G]]		[[Category: Wang, G.G]]
	[[Category: Liu, Z.C]]		[[Category: Liu, Z.C]]
		+	[[Category: Zhou, Y.Q]]

OCA at 08:38, 21 September 2016

2016-09-21T08:38:53Z

←Older revision		Revision as of 08:38, 21 September 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5guj is ON HOLD	+	The entry 5guj is ON HOLD until Aug 29 2018

	Authors: Zhou, Y.Q., Liu, Z.C., Wang, G.G.		Authors: Zhou, Y.Q., Liu, Z.C., Wang, G.G.

OCA: Protected "5guj" [edit=sysop:move=sysop]

2016-09-09T12:05:56Z

Protected "5guj" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:05, 9 September 2016

OCA: New page: '''Unreleased structure''' The entry 5guj is ON HOLD Authors: Zhou, Y.Q., Liu, Z.C., Wang, G.G. Description: Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natu...

2016-09-09T12:05:55Z

New page: '''Unreleased structure''' The entry 5guj is ON HOLD Authors: Zhou, Y.Q., Liu, Z.C., Wang, G.G. Description: Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natu...

New page

'''Unreleased structure'''

The entry 5guj is ON HOLD

Authors: Zhou, Y.Q., Liu, Z.C., Wang, G.G.

Description: Crystal structure of the Bacillus subtilis DnaG RNA Polymerase Domain, natural degradation of full length DnaG
[[Category: Unreleased Structures]]
[[Category: Zhou, Y.Q]]
[[Category: Wang, G.G]]
[[Category: Liu, Z.C]]