5h57 - Revision history

OCA at 07:23, 9 August 2023

2023-08-09T07:23:53Z

←Older revision		Revision as of 07:23, 9 August 2023
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	==Ferredoxin III from maize root==		==Ferredoxin III from maize root==
-	<StructureSection load='5h57' size='340' side='right' caption='[[5h57]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='5h57' size='340' side='right'caption='[[5h57]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5h57]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Maize Maize~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H57 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5H57 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5h57]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Zea_mays Zea mays]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H57 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5H57 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.5Å</td></tr>
-	~~<tr~~ id~~='related'><td class~~="~~sblockLbl~~">~~<b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5h59\|5h59]]~~, [[~~5h5j~~\|~~5h5j~~]]</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~FDX3, PFD3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=4577 MAIZE]~~)</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5h57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h57 OCA], [https://pdbe.org/5h57 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5h57 RCSB], [https://www.ebi.ac.uk/pdbsum/5h57 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5h57 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5h57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h57 OCA], [~~http~~://pdbe.org/5h57 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5h57 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5h57 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5h57 ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/FER3_MAIZE FER3_MAIZE]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	+	[https://www.uniprot.org/uniprot/FER3_MAIZE FER3_MAIZE] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 5h57" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5h57" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ferredoxin 3D structures\|Ferredoxin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Maize~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Hase, T~~]]	+	[[Category: Zea mays]]
-	[[Category: ~~Kurisu, G~~]]	+	[[Category: Hase T]]
-	[[Category: ~~Electron carrier protein]]~~	+	[[Category: Kurisu G]]
-	~~[[Category: Electron transport~~]]	+

OCA at 09:57, 22 November 2017

2017-11-22T09:57:57Z

←Older revision		Revision as of 09:57, 22 November 2017
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	<StructureSection load='5h57' size='340' side='right' caption='[[5h57]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='5h57' size='340' side='right' caption='[[5h57]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5h57]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H57 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5H57 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5h57]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Maize Maize]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H57 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5H57 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5h59\|5h59]], [[5h5j\|5h5j]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5h59\|5h59]], [[5h5j\|5h5j]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">FDX3, PFD3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4577 MAIZE])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5h57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h57 OCA], [http://pdbe.org/5h57 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h57 RCSB], [http://www.ebi.ac.uk/pdbsum/5h57 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h57 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5h57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h57 OCA], [http://pdbe.org/5h57 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h57 RCSB], [http://www.ebi.ac.uk/pdbsum/5h57 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h57 ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Maize]]
	[[Category: Hase, T]]		[[Category: Hase, T]]
	[[Category: Kurisu, G]]		[[Category: Kurisu, G]]
	[[Category: Electron carrier protein]]		[[Category: Electron carrier protein]]
	[[Category: Electron transport]]		[[Category: Electron transport]]

OCA at 17:55, 1 February 2017

2017-02-01T17:55:26Z

←Older revision		Revision as of 17:55, 1 February 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5h57 is ~~ON HOLD~~	+	==Ferredoxin III from maize root==
		+	<StructureSection load='5h57' size='340' side='right' caption='[[5h57]], [[Resolution\|resolution]] 2.50Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5h57]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H57 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5H57 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5h59\|5h59]], [[5h5j\|5h5j]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5h57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h57 OCA], [http://pdbe.org/5h57 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h57 RCSB], [http://www.ebi.ac.uk/pdbsum/5h57 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h57 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FER3_MAIZE FER3_MAIZE]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	In higher plants, ferredoxin (Fd) and ferredoxin-NADP+ reductase (FNR) are each present as distinct isoproteins of photosynthetic type (leaf type) and non-photosynthetic type (root type). Root-type Fd and FNR are considered to facilitate the electron transfer from NADPH to Fd in the direction opposite to that occurring in the photosynthetic processes. We previously reported the crystal structure of the electron transfer complex between maize leaf FNR and Fd (leaf FNR:Fd complex), providing insights into the molecular interactions of the two proteins. Here we show the 2.49 A crystal structure of the maize root FNR:Fd complex, which reveals that the orientation of FNR and Fd remarkably varies from that of the leaf FNR:Fd complex, giving a structural basis for reversing the redox path. Root FNR was previously shown to interact preferentially with root Fd over leaf Fd, while leaf FNR retains similar affinity for these two types of Fds. The structural basis for such differential interaction was investigated using site-directed mutagenesis of the isotype-specific amino acid residues on the interface of Fd and FNR, based on the crystal structures of the FNR:Fd complexes from maize leaves and roots. Kinetic and physical binding analyses of the resulting mutants lead to the conclusion that the rearrangement of the charged amino acid residues on the Fd-binding surface of FNR confers isotype-specific interaction with Fd, which brings about the evolutional switch between photosynthetic and heterotrophic redox cascades.

-	~~Authors~~: Kurisu, G., ~~Hase~~, T.	+	Structural basis for the isotype-specific interactions of ferredoxin and ferredoxin: NADP+ oxidoreductase: an evolutionary switch between photosynthetic and heterotrophic assimilation.,Shinohara F, Kurisu G, Hanke G, Bowsher C, Hase T, Kimata-Ariga Y Photosynth Res. 2017 Jan 16. doi: 10.1007/s11120-016-0331-1. PMID:28093652<ref>PMID:28093652</ref>

-	~~Description: Ferredoxin III from maize root~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category: Unreleased Structures]]~~	+	</div>
-	~~[[Category~~: ~~Kurisu, G]]~~	+	<div class="pdbe-citations 5h57" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Hase, T]]		[[Category: Hase, T]]
		+	[[Category: Kurisu, G]]
		+	[[Category: Electron carrier protein]]
		+	[[Category: Electron transport]]

OCA: Protected "5h57" [edit=sysop:move=sysop]

2016-12-09T13:45:22Z

Protected "5h57" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:45, 9 December 2016

OCA: New page: '''Unreleased structure''' The entry 5h57 is ON HOLD Authors: Kurisu, G., Hase, T. Description: Ferredoxin III from maize root Category: Unreleased Structures [[Category: Kurisu, G...

2016-12-09T13:45:20Z

New page: '''Unreleased structure''' The entry 5h57 is ON HOLD Authors: Kurisu, G., Hase, T. Description: Ferredoxin III from maize root Category: Unreleased Structures [[Category: Kurisu, G...

New page

'''Unreleased structure'''

The entry 5h57 is ON HOLD

Authors: Kurisu, G., Hase, T.

Description: Ferredoxin III from maize root
[[Category: Unreleased Structures]]
[[Category: Kurisu, G]]
[[Category: Hase, T]]