5hdi - Revision history

OCA at 07:32, 9 August 2023

2023-08-09T07:32:31Z

←Older revision		Revision as of 07:32, 9 August 2023
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	<StructureSection load='5hdi' size='340' side='right'caption='[[5hdi]], [[Resolution\|resolution]] 1.54Å' scene=''>		<StructureSection load='5hdi' size='340' side='right'caption='[[5hdi]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hdi]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus~~ tuberculosis~~" (zopf 1883) klein 1884~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HDI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5HDI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hdi]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HDI FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.54Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>cyp144, Rv1777, MTCY25C11.04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~1773~~ "~~Bacillus tuberculosis~~" ~~(Zopf 1883) Klein 1884])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5hdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hdi OCA], [~~http~~://pdbe.org/5hdi PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5hdi RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5hdi PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5hdi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hdi OCA], [https://pdbe.org/5hdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hdi RCSB], [https://www.ebi.ac.uk/pdbsum/5hdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hdi ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/CP144_MYCTU CP144_MYCTU]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Chenge, J~~]]	+	[[Category: Mycobacterium tuberculosis]]
-	[[Category: ~~Driscoll, M D]]~~	+	[[Category: Chenge J]]
-	~~[[Category: Leys, D]]~~	+	[[Category: Driscoll MD]]
-	~~[[Category: McLean, K~~ J]]	+	[[Category: Leys D]]
-	[[Category: ~~Munro, A W~~]]	+	[[Category: McLean KJ]]
-	[[Category: ~~Cytochrome p450~~]]	+	[[Category: Munro AW]]
-	[[Category: ~~Heme-binding~~]]	+
-	[[Category: ~~Monooxygenase]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 07:01, 20 May 2020

2020-05-20T07:01:09Z

←Older revision		Revision as of 07:01, 20 May 2020
Line 1:		Line 1:

	==Structural characterization of CYP144A1, a Mycobacterium tuberculosis cytochrome P450==		==Structural characterization of CYP144A1, a Mycobacterium tuberculosis cytochrome P450==
-	<StructureSection load='5hdi' size='340' side='right' caption='[[5hdi]], [[Resolution\|resolution]] 1.54Å' scene=''>	+	<StructureSection load='5hdi' size='340' side='right'caption='[[5hdi]], [[Resolution\|resolution]] 1.54Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hdi]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HDI OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5HDI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hdi]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HDI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5HDI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5hdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hdi OCA], [http://pdbe.org/5hdi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hdi RCSB], [http://www.ebi.ac.uk/pdbsum/5hdi PDBsum]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">cyp144, Rv1777, MTCY25C11.04 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5hdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hdi OCA], [http://pdbe.org/5hdi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hdi RCSB], [http://www.ebi.ac.uk/pdbsum/5hdi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hdi ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 5hdi" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5hdi" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Cytochrome P450 3D structures\|Cytochrome P450 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Chenge, J]]		[[Category: Chenge, J]]
	[[Category: Driscoll, M D]]		[[Category: Driscoll, M D]]

OCA at 08:10, 20 June 2016

2016-06-20T08:10:36Z

←Older revision		Revision as of 08:10, 20 June 2016
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hdi OCA], [http://pdbe.org/5hdi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hdi RCSB], [http://www.ebi.ac.uk/pdbsum/5hdi PDBsum]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hdi OCA], [http://pdbe.org/5hdi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hdi RCSB], [http://www.ebi.ac.uk/pdbsum/5hdi PDBsum]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Mycobacterium tuberculosis (Mtb) causes the disease tuberculosis (TB). The virulent Mtb H37Rv strain encodes 20 cytochrome P450 (CYP) enzymes, many of which are implicated in Mtb survival and pathogenicity in the human host. Bioinformatics analysis revealed that CYP144A1 is retained exclusively within the Mycobacterium genus, particularly in species causing human and animal disease. Transcriptomic annotation revealed two possible CYP144A1 start codons, leading to expression of (i) a "full-length" 434 amino acid version (CYP144A1-FLV) and (ii) a "truncated" 404 amino acid version (CYP144A1-TRV). Computational analysis predicted that the extended N-terminal region of CYP144A1-FLV is largely unstructured. CYP144A1 FLV and TRV forms were purified in heme-bound states. Mass spectrometry confirmed production of intact, His6-tagged forms of CYP144A1-FLV and -TRV, with EPR demonstrating cysteine thiolate coordination of heme iron in both cases. Hydrodynamic analysis indicated that both CYP144A1 forms are monomeric. CYP144A1-TRV was crystallized and the first structure of a CYP144 family P450 protein determined. CYP144A1-TRV has an open structure primed for substrate binding, with a large active site cavity. Our data provide the first evidence that Mtb produces two different forms of CYP144A1 from alternative transcripts, with CYP144A1-TRV generated from a leaderless transcript lacking a 5'-untranslated region and Shine-Dalgarno ribosome binding site.
		+
		+	Structural characterization of CYP144A1 - a cytochrome P450 enzyme expressed from alternative transcripts in Mycobacterium tuberculosis.,Chenge J, Kavanagh ME, Driscoll MD, McLean KJ, Young DB, Cortes T, Matak-Vinkovic D, Levy CW, Rigby SE, Leys D, Abell C, Munro AW Sci Rep. 2016 May 26;6:26628. doi: 10.1038/srep26628. PMID:27225995<ref>PMID:27225995</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5hdi" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 19:45, 13 May 2016

2016-05-13T19:45:02Z

←Older revision		Revision as of 19:45, 13 May 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5hdi is ~~ON HOLD~~	+	==Structural characterization of CYP144A1, a Mycobacterium tuberculosis cytochrome P450==
-		+	<StructureSection load='5hdi' size='340' side='right' caption='[[5hdi]], [[Resolution\|resolution]] 1.54Å' scene=''>
-	~~Authors~~: ~~Chenge, J~~.~~, Driscoll, M~~.D., ~~McLean, K~~.J., ~~Munro~~, A.W., ~~Leys, D~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5hdi]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HDI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HDI FirstGlance]. <br>
-	~~Description~~: ~~Structural characterization of CYP144A1~~, ~~a Mycobacterium tuberculosis cytochrome P450~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hdi OCA], [http://pdbe.org/5hdi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hdi RCSB], [http://www.ebi.ac.uk/pdbsum/5hdi PDBsum]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chenge, J]]
		+	[[Category: Driscoll, M D]]
	[[Category: Leys, D]]		[[Category: Leys, D]]
-	[[Category: ~~Mclean~~, K.J]]	+	[[Category: McLean, K J]]
-	[[Category: ~~Chenge~~, J]]	+	[[Category: Munro, A W]]
-	[[Category: ~~Driscoll, M.D~~]]	+	[[Category: Cytochrome p450]]
-	[[Category: ~~Munro, A.W~~]]	+	[[Category: Heme-binding]]
		+	[[Category: Monooxygenase]]
		+	[[Category: Oxidoreductase]]

OCA: Protected "5hdi" [edit=sysop:move=sysop]

2016-01-13T18:53:02Z

Protected "5hdi" [edit=sysop:move=sysop]

←Older revision

Revision as of 18:53, 13 January 2016

OCA: New page: '''Unreleased structure''' The entry 5hdi is ON HOLD Authors: Chenge, J., Driscoll, M.D., McLean, K.J., Munro, A.W., Leys, D. Description: Structural characterization of CYP144A1, a My...

2016-01-13T18:53:00Z

New page: '''Unreleased structure''' The entry 5hdi is ON HOLD Authors: Chenge, J., Driscoll, M.D., McLean, K.J., Munro, A.W., Leys, D. Description: Structural characterization of CYP144A1, a My...

New page

'''Unreleased structure'''

The entry 5hdi is ON HOLD

Authors: Chenge, J., Driscoll, M.D., McLean, K.J., Munro, A.W., Leys, D.

Description: Structural characterization of CYP144A1, a Mycobacterium tuberculosis cytochrome P450
[[Category: Unreleased Structures]]
[[Category: Leys, D]]
[[Category: Mclean, K.J]]
[[Category: Chenge, J]]
[[Category: Driscoll, M.D]]
[[Category: Munro, A.W]]