5hmq - Revision history

OCA at 10:47, 16 August 2023

2023-08-16T10:47:23Z

←Older revision		Revision as of 10:47, 16 August 2023
Line 3:		Line 3:
	<StructureSection load='5hmq' size='340' side='right'caption='[[5hmq]], [[Resolution\|resolution]] 2.37Å' scene=''>		<StructureSection load='5hmq' size='340' side='right'caption='[[5hmq]], [[Resolution\|resolution]] 2.37Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hmq]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Psepk Psepk~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HMQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5HMQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hmq]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_KT2440 Pseudomonas putida KT2440]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HMQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HMQ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.371Å</td></tr>
-	~~<tr~~ id~~='NonStdRes'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Non-Standard_Residue~~\|~~NonStd Res:~~]]~~</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>quiC, PP_2554 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~160488 PSEPK])</td~~><~~/tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hmq OCA], [https://pdbe.org/5hmq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hmq RCSB], [https://www.ebi.ac.uk/pdbsum/5hmq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hmq ProSAT]</span></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/3-dehydroshikimate_dehydratase 3-dehydroshikimate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.118 4.2.1.118]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5hmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hmq OCA], [~~http~~://pdbe.org/5hmq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5hmq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5hmq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5hmq ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/DSD_PSEPK DSD_PSEPK] Catalyzes the conversion of 3-dehydroshikimate to protocatechuate (3,4-dihydroxybenzoate), a common intermediate of quinate and shikimate degradation pathways.<ref>PMID:27706847</ref>

	==See Also==		==See Also==
	*[[Dioxygenase 3D structures\|Dioxygenase 3D structures]]		*[[Dioxygenase 3D structures\|Dioxygenase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: 3-dehydroshikimate dehydratase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Psepk~~]]	+	[[Category: Pseudomonas putida KT2440]]
-	[[Category: Christendat, D]]	+	[[Category: Christendat D]]
-	[[Category: Peek, J]]	+	[[Category: Peek J]]
-	~~[[Category: 4-hydroxyphenylpyruvate dioxygenase]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Xylose isomerase-like tim barrel~~]]	+

OCA at 08:04, 8 January 2020

2020-01-08T08:04:01Z

←Older revision		Revision as of 08:04, 8 January 2020
Line 1:		Line 1:

	==xylose isomerase-like TIM barrel/4-hydroxyphenylpyruvate dioxygenase fusion protein==		==xylose isomerase-like TIM barrel/4-hydroxyphenylpyruvate dioxygenase fusion protein==
-	<StructureSection load='5hmq' size='340' side='right' caption='[[5hmq]], [[Resolution\|resolution]] 2.37Å' scene=''>	+	<StructureSection load='5hmq' size='340' side='right'caption='[[5hmq]], [[Resolution\|resolution]] 2.37Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hmq]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HMQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HMQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hmq]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Psepk Psepk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HMQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HMQ FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">quiC, PP_2554 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=160488 PSEPK])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-dehydroshikimate_dehydratase 3-dehydroshikimate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.118 4.2.1.118] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-dehydroshikimate_dehydratase 3-dehydroshikimate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.118 4.2.1.118] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hmq OCA], [http://pdbe.org/5hmq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hmq RCSB], [http://www.ebi.ac.uk/pdbsum/5hmq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hmq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hmq OCA], [http://pdbe.org/5hmq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hmq RCSB], [http://www.ebi.ac.uk/pdbsum/5hmq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hmq ProSAT]</span></td></tr>
Line 11:		Line 12:

	==See Also==		==See Also==
-	*[[Dioxygenase\|Dioxygenase]]	+	*[[Dioxygenase 3D structures\|Dioxygenase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: 3-dehydroshikimate dehydratase]]		[[Category: 3-dehydroshikimate dehydratase]]
		+	[[Category: Large Structures]]
		+	[[Category: Psepk]]
	[[Category: Christendat, D]]		[[Category: Christendat, D]]
	[[Category: Peek, J]]		[[Category: Peek, J]]

OCA at 06:58, 6 October 2017

2017-10-06T06:58:59Z

←Older revision		Revision as of 06:58, 6 October 2017
Line 9:		Line 9:
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hmq OCA], [http://pdbe.org/5hmq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hmq RCSB], [http://www.ebi.ac.uk/pdbsum/5hmq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hmq ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hmq OCA], [http://pdbe.org/5hmq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hmq RCSB], [http://www.ebi.ac.uk/pdbsum/5hmq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hmq ProSAT]</span></td></tr>
	</table>		</table>
		+
		+	==See Also==
		+	*[[Dioxygenase\|Dioxygenase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 00:58, 20 October 2016

2016-10-20T00:58:20Z

←Older revision		Revision as of 00:58, 20 October 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5hmq is ~~ON HOLD~~	+	==xylose isomerase-like TIM barrel/4-hydroxyphenylpyruvate dioxygenase fusion protein==
-		+	<StructureSection load='5hmq' size='340' side='right' caption='[[5hmq]], [[Resolution\|resolution]] 2.37Å' scene=''>
-	~~Authors~~: ~~Peek~~, J., ~~Christendat~~, D.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5hmq]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HMQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HMQ FirstGlance]. <br>
-	~~Description~~: ~~xylose isomerase~~-~~like TIM barrel/4-hydroxyphenylpyruvate dioxygenase fusion protein~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-dehydroshikimate_dehydratase 3-dehydroshikimate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.118 4.2.1.118] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hmq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hmq OCA], [http://pdbe.org/5hmq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hmq RCSB], [http://www.ebi.ac.uk/pdbsum/5hmq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hmq ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: 3-dehydroshikimate dehydratase]]
		+	[[Category: Christendat, D]]
	[[Category: Peek, J]]		[[Category: Peek, J]]
-	[[Category: ~~Christendat, D~~]]	+	[[Category: 4-hydroxyphenylpyruvate dioxygenase]]
		+	[[Category: Lyase]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Xylose isomerase-like tim barrel]]

OCA: Protected "5hmq" [edit=sysop:move=sysop]

2016-01-28T00:53:57Z

Protected "5hmq" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:53, 28 January 2016

OCA: New page: '''Unreleased structure''' The entry 5hmq is ON HOLD Authors: Peek, J., Christendat, D. Description: xylose isomerase-like TIM barrel/4-hydroxyphenylpyruvate dioxygenase fusion protein...

2016-01-28T00:53:55Z

New page: '''Unreleased structure''' The entry 5hmq is ON HOLD Authors: Peek, J., Christendat, D. Description: xylose isomerase-like TIM barrel/4-hydroxyphenylpyruvate dioxygenase fusion protein...

New page

'''Unreleased structure'''

The entry 5hmq is ON HOLD

Authors: Peek, J., Christendat, D.

Description: xylose isomerase-like TIM barrel/4-hydroxyphenylpyruvate dioxygenase fusion protein
[[Category: Unreleased Structures]]
[[Category: Peek, J]]
[[Category: Christendat, D]]