5hrk - Revision history

OCA at 10:51, 16 August 2023

2023-08-16T10:51:51Z

←Older revision		Revision as of 10:51, 16 August 2023
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	<StructureSection load='5hrk' size='340' side='right'caption='[[5hrk]], [[Resolution\|resolution]] 2.90Å' scene=''>		<StructureSection load='5hrk' size='340' side='right'caption='[[5hrk]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hrk]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Asf Asf~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HRK OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5HRK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hrk]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/African_swine_fever_virus African swine fever virus] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HRK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HRK FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.9Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hr9\|5hr9]], [[5hrb\|5hrb]], [[5hrd\|5hrd]], [[5hre\|5hre]], [[5hrf\|5hrf]], [[5hrg\|5hrg]], [[5hrh\|5hrh]], [[5hrl\|5hrl]]</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">O174L ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10497 ASF])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hrk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hrk OCA], [https://pdbe.org/5hrk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hrk RCSB], [https://www.ebi.ac.uk/pdbsum/5hrk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hrk ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5hrk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hrk OCA], [~~http~~://pdbe.org/5hrk PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5hrk RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5hrk PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5hrk ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/DPOLX_ASFB7 DPOLX_ASFB7] Error-prone polymerase lacking a proofreading 3'-5' exonuclease which plays a role in viral DNA repair. Specifically binds intermediates in the single-nucleotide base-excision repair process. Also catalyzes DNA polymerization with low nucleotide-insertion fidelity. Together with the viral DNA ligase, fills the single nucleotide gaps generated by the AP endonuclease.<ref>PMID:12595253</ref> <ref>PMID:11685239</ref>
		+
		+	==See Also==
		+	*[[DNA polymerase 3D structures\|DNA polymerase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Asf~~]]	+	[[Category: African swine fever virus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Chen, Y Q~~]]	+	[[Category: Synthetic construct]]
-	[[Category: ~~Gan, J H~~]]	+	[[Category: Chen YQ]]
-	[[Category: ~~Zhang, J~~]]	+	[[Category: Gan JH]]
-	[[Category: ~~Asfv]]~~	+	[[Category: Zhang J]]
-	~~[[Category: Polx]]~~	+
-	~~[[Category: Transferase-dna complex~~]]	+

OCA at 08:29, 27 May 2020

2020-05-27T08:29:21Z

←Older revision		Revision as of 08:29, 27 May 2020
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	==The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary complex==		==The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary complex==
-	<StructureSection load='5hrk' size='340' side='right' caption='[[5hrk]], [[Resolution\|resolution]] 2.90Å' scene=''>	+	<StructureSection load='5hrk' size='340' side='right'caption='[[5hrk]], [[Resolution\|resolution]] 2.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5hrk]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HRK OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5HRK FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5hrk]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Asf Asf]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HRK OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5HRK FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hr9\|5hr9]], [[5hrb\|5hrb]], [[5hrd\|5hrd]], [[5hre\|5hre]], [[5hrf\|5hrf]], [[5hrg\|5hrg]], [[5hrh\|5hrh]], [[5hrl\|5hrl]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hr9\|5hr9]], [[5hrb\|5hrb]], [[5hrd\|5hrd]], [[5hre\|5hre]], [[5hrf\|5hrf]], [[5hrg\|5hrg]], [[5hrh\|5hrh]], [[5hrl\|5hrl]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5hrk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hrk OCA], [http://pdbe.org/5hrk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hrk RCSB], [http://www.ebi.ac.uk/pdbsum/5hrk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hrk ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">O174L ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10497 ASF])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5hrk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hrk OCA], [http://pdbe.org/5hrk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hrk RCSB], [http://www.ebi.ac.uk/pdbsum/5hrk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hrk ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Asf]]
		+	[[Category: Large Structures]]
	[[Category: Chen, Y Q]]		[[Category: Chen, Y Q]]
	[[Category: Gan, J H]]		[[Category: Gan, J H]]

OCA at 00:42, 19 January 2017

2017-01-19T00:42:57Z

←Older revision		Revision as of 00:42, 19 January 2017
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-	'''Unreleased structure'''

-	~~The entry 5hrk is ON HOLD until Paper Publication~~	+	==The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary complex==
-		+	<StructureSection load='5hrk' size='340' side='right' caption='[[5hrk]], [[Resolution\|resolution]] 2.90Å' scene=''>
-	~~Authors: Chen, Y.Q., Zhang, J., Gan, J.H.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5hrk]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HRK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HRK FirstGlance]. <br>
-	~~Description:~~ The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary complex	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DGT:2-DEOXYGUANOSINE-5-TRIPHOSPHATE'>DGT</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5hr9\|5hr9]], [[5hrb\|5hrb]], [[5hrd\|5hrd]], [[5hre\|5hre]], [[5hrf\|5hrf]], [[5hrg\|5hrg]], [[5hrh\|5hrh]], [[5hrl\|5hrl]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hrk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hrk OCA], [http://pdbe.org/5hrk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hrk RCSB], [http://www.ebi.ac.uk/pdbsum/5hrk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hrk ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chen, Y Q]]
		+	[[Category: Gan, J H]]
	[[Category: Zhang, J]]		[[Category: Zhang, J]]
-	[[Category: ~~Gan, J.H~~]]	+	[[Category: Asfv]]
-	[[Category: ~~Chen, Y.Q~~]]	+	[[Category: Polx]]
		+	[[Category: Transferase-dna complex]]

OCA at 15:38, 10 February 2016

2016-02-10T15:38:09Z

←Older revision		Revision as of 15:38, 10 February 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5hrk is ON HOLD	+	The entry 5hrk is ON HOLD until Paper Publication

-	Authors: Chen,Y.Q, Zhang,J, Gan,J.H	+	Authors: Chen, Y.Q., Zhang, J., Gan, J.H.

	Description: The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary complex		Description: The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary complex
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: ~~Chen,Y.Q,~~ Zhang,J, Gan,J.H]]	+	[[Category: Zhang, J]]
		+	[[Category: Gan, J.H]]
		+	[[Category: Chen, Y.Q]]

OCA: Protected "5hrk" [edit=sysop:move=sysop]

2016-02-03T14:13:22Z

Protected "5hrk" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:13, 3 February 2016

OCA: New page: '''Unreleased structure''' The entry 5hrk is ON HOLD Authors: Chen,Y.Q, Zhang,J, Gan,J.H Description: The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary comp...

2016-02-03T14:13:21Z

New page: '''Unreleased structure''' The entry 5hrk is ON HOLD Authors: Chen,Y.Q, Zhang,J, Gan,J.H Description: The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary comp...

New page

'''Unreleased structure'''

The entry 5hrk is ON HOLD

Authors: Chen,Y.Q, Zhang,J, Gan,J.H

Description: The crystal structure of AsfvPolX(H115F mutant): 1nt-gap(P) DNA2:dGTP ternary complex
[[Category: Unreleased Structures]]
[[Category: Chen,Y.Q, Zhang,J, Gan,J.H]]