5i5i - Revision history

OCA at 08:23, 23 August 2023

2023-08-23T08:23:53Z

←Older revision		Revision as of 08:23, 23 August 2023
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	<StructureSection load='5i5i' size='340' side='right'caption='[[5i5i]], [[Resolution\|resolution]] 2.14Å' scene=''>		<StructureSection load='5i5i' size='340' side='right'caption='[[5i5i]], [[Resolution\|resolution]] 2.14Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5i5i]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Shedo Shedo~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I5I OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5I5I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5i5i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_denitrificans_OS217 Shewanella denitrificans OS217]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I5I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5I5I FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>nosZ, Sden_2219 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id~~=318161 SHEDO])</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.14Å</td></tr>
-	~~<tr id='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrous~~-~~oxide_reductase Nitrous-oxide reductase]~~, ~~with EC number~~ [~~http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.~~2.~~4 1.7.2.4] </span>~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5i5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i5i OCA], [https://pdbe.org/5i5i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5i5i RCSB], [https://www.ebi.ac.uk/pdbsum/5i5i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5i5i ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5i5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i5i OCA], [~~http~~://pdbe.org/5i5i PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5i5i RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5i5i PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5i5i ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/Q12M27_SHEDO Q12M27_SHEDO]] Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide.[HAMAP-Rule:MF_00716]	+	[https://www.uniprot.org/uniprot/Q12M27_SHEDO Q12M27_SHEDO] Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide.[HAMAP-Rule:MF_00716]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Nitrous-oxide reductase]]~~	+	[[Category: Shewanella denitrificans OS217]]
-	~~[[Category: Shedo~~]]	+	[[Category: Einsle O]]
-	[[Category: Einsle, O]]	+	[[Category: Schneider LK]]
-	[[Category: Schneider~~, L K]]~~	+
-	~~[[Category: Nitrogen cycle nitrous oxide reductase beta propeller apoprotein]]~~	+
-	~~[[Category: Oxidoreductase~~]]	+

OCA at 06:21, 16 October 2019

2019-10-16T06:21:51Z

←Older revision		Revision as of 06:21, 16 October 2019
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	==Shewanella denitrificans nitrous oxide reductase, app form==		==Shewanella denitrificans nitrous oxide reductase, app form==
-	<StructureSection load='5i5i' size='340' side='right' caption='[[5i5i]], [[Resolution\|resolution]] 2.14Å' scene=''>	+	<StructureSection load='5i5i' size='340' side='right'caption='[[5i5i]], [[Resolution\|resolution]] 2.14Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5i5i]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I5I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I5I FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5i5i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Shedo Shedo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I5I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I5I FirstGlance]. <br>
-	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrous-oxide_reductase Nitrous-oxide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.4 1.7.2.4] </span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">nosZ, Sden_2219 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=318161 SHEDO])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i5i OCA], [http://pdbe.org/5i5i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i5i RCSB], [http://www.ebi.ac.uk/pdbsum/5i5i PDBsum]</span></td></tr>	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrous-oxide_reductase Nitrous-oxide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.4 1.7.2.4] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i5i OCA], [http://pdbe.org/5i5i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i5i RCSB], [http://www.ebi.ac.uk/pdbsum/5i5i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5i5i ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Nitrous-oxide reductase]]		[[Category: Nitrous-oxide reductase]]
		+	[[Category: Shedo]]
	[[Category: Einsle, O]]		[[Category: Einsle, O]]
	[[Category: Schneider, L K]]		[[Category: Schneider, L K]]
	[[Category: Nitrogen cycle nitrous oxide reductase beta propeller apoprotein]]		[[Category: Nitrogen cycle nitrous oxide reductase beta propeller apoprotein]]
	[[Category: Oxidoreductase]]		[[Category: Oxidoreductase]]

OCA at 15:04, 2 March 2016

2016-03-02T15:04:59Z

←Older revision		Revision as of 15:04, 2 March 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5i5i is ~~ON HOLD~~	+	==Shewanella denitrificans nitrous oxide reductase, app form==
		+	<StructureSection load='5i5i' size='340' side='right' caption='[[5i5i]], [[Resolution\|resolution]] 2.14Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5i5i]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I5I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I5I FirstGlance]. <br>
		+	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitrous-oxide_reductase Nitrous-oxide reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.4 1.7.2.4] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i5i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i5i OCA], [http://pdbe.org/5i5i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i5i RCSB], [http://www.ebi.ac.uk/pdbsum/5i5i PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q12M27_SHEDO Q12M27_SHEDO]] Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide.[HAMAP-Rule:MF_00716]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The copper enzyme nitrous oxide reductase catalyzes the two-electron reduction of nitrous oxide (N2O) to dinitrogen (N2). Its maturation largely occurs in the periplasm and includes the insertion of at least one Ca2+ ion per monomer. Here we have investigated the role of this structural cation in recombinantly produced apo-N2OR from Shewanella denitrificans and have determined the three-dimensional structure of the protein by X-ray crystallography. In the absence of Ca2+, substantial parts of the enzyme surrounding the binding sites for the copper ions show structural disorder. Reconstitution of the binuclear CuA site was possible in vitro but required the presence of Ca2+ ions for a stable insertion of the center. In contrast, an excess of Ca2+ prevented copper insertion, and the structural analysis of the Ca2+ apo form revealed that the cation is sufficient to structure the disordered regions of the protein even in the absence of Cu ions, indicating that the geometry of the two noncanonical copper centers is largely predetermined by the protein structure.

-	~~Authors: Schneider, L.K~~., ~~Einsle~~, O.	+	Role of Calcium in Secondary Structure Stabilization during Maturation of Nitrous Oxide Reductase.,Schneider LK, Einsle O Biochemistry. 2016 Feb 29. PMID:26885878<ref>PMID:26885878</ref>

-	~~Description:~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
-	[[Category: ~~Schneider, L.K~~]]	+	<div class="pdbe-citations 5i5i" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Nitrous-oxide reductase]]
	[[Category: Einsle, O]]		[[Category: Einsle, O]]
		+	[[Category: Schneider, L K]]
		+	[[Category: Nitrogen cycle nitrous oxide reductase beta propeller apoprotein]]
		+	[[Category: Oxidoreductase]]

OCA: Protected "5i5i" [edit=sysop:move=sysop]

2016-02-26T16:48:44Z

Protected "5i5i" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:48, 26 February 2016

OCA: New page: '''Unreleased structure''' The entry 5i5i is ON HOLD Authors: Schneider, L.K., Einsle, O. Description: Category: Unreleased Structures Category: Schneider, L.K [[Category: Ein...

2016-02-26T16:48:42Z

New page: '''Unreleased structure''' The entry 5i5i is ON HOLD Authors: Schneider, L.K., Einsle, O. Description: Category: Unreleased Structures Category: Schneider, L.K [[Category: Ein...

New page

'''Unreleased structure'''

The entry 5i5i is ON HOLD

Authors: Schneider, L.K., Einsle, O.

Description:
[[Category: Unreleased Structures]]
[[Category: Schneider, L.K]]
[[Category: Einsle, O]]