5i84 - Revision history

OCA at 08:26, 23 August 2023

2023-08-23T08:26:19Z

←Older revision		Revision as of 08:26, 23 August 2023
Line 3:		Line 3:
	<StructureSection load='5i84' size='340' side='right'caption='[[5i84]], [[Resolution\|resolution]] 2.98Å' scene=''>		<StructureSection load='5i84' size='340' side='right'caption='[[5i84]], [[Resolution\|resolution]] 2.98Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5i84]] is a 8 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Xanac Xanac~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I84 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5I84 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5i84]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Xanthomonas_citri_pv._citri_str._306 Xanthomonas citri pv. citri str. 306]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I84 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5I84 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=PO4:PHOSPHATE+ION'>PO4</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.98Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~phoX, XAC1578 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=190486 XANAC])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5i84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i84 OCA], [~~http~~://pdbe.org/5i84 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5i84 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5i84 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5i84 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5i84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i84 OCA], [https://pdbe.org/5i84 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5i84 RCSB], [https://www.ebi.ac.uk/pdbsum/5i84 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5i84 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/Q8PM55_XANAC Q8PM55_XANAC]] Part of the ABC transporter complex PstSACB involved in phosphate import.[PIRNR:PIRNR002756]	+	[https://www.uniprot.org/uniprot/Q8PM55_XANAC Q8PM55_XANAC] Part of the ABC transporter complex PstSACB involved in phosphate import.[PIRNR:PIRNR002756]
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	Xanthomonas axonopodis pv. citri (X. citri) is an important bacterium that causes citrus canker disease in plants in Brazil and around the world, leading to significant economic losses. Determination of the physiology and mechanisms of pathogenesis of this bacterium is an important step in the development of strategies for its containment. Phosphate is an essential ion in all microrganisms owing its importance during the synthesis of macromolecules and in gene and protein regulation. Interestingly, X. citri has been identified to present two periplasmic binding proteins that have not been further characterized: PstS, from an ATP-binding cassette for high-affinity uptake and transport of phosphate, and PhoX, which is encoded by an operon that also contains a putative porin for the transport of phosphate. Here, the expression, purification and crystallization of the phosphate-binding protein PhoX and X-ray data collection at 3.0 A resolution are described. Biochemical, biophysical and structural data for this protein will be helpful in the elucidation of its function in phosphate uptake and the physiology of the bacterium.	+
-		+
-	Crystallization and preliminary X-ray diffraction analysis of the phosphate-binding protein PhoX from Xanthomonas citri.,Pegos VR, Medrano FJ, Balan A Acta Crystallogr F Struct Biol Commun. 2014 Dec 1;70(Pt 12):1604-7. doi:, 10.1107/S2053230X14021840. Epub 2014 Nov 14. PMID:25484207<ref>PMID:25484207</ref>	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 5i84" style="background-color:#fffaf0;"></div>~~	+

	==See Also==		==See Also==
	*[[Phosphate-binding protein\|Phosphate-binding protein]]		*[[Phosphate-binding protein\|Phosphate-binding protein]]
-	== References ==
-	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Xanac~~]]	+	[[Category: Xanthomonas citri pv. citri str. 306]]
-	[[Category: Balan, A]]	+	[[Category: Balan A]]
-	[[Category: Medrano~~, F J~~]]	+	[[Category: Medrano FJ]]
-	[[Category: Pegos~~, V R]]~~	+	[[Category: Pegos VR]]
-	~~[[Category: Abc transporter]]~~	+
-	~~[[Category: Periplasmic-binding protein]]~~	+
-	~~[[Category: Phosphate-binding protein]]~~	+
-	~~[[Category: Phox]]~~	+
-	~~[[Category: Transport protein~~]]	+

OCA at 06:23, 17 April 2019

2019-04-17T06:23:04Z

←Older revision		Revision as of 06:23, 17 April 2019
Line 1:		Line 1:

	==Structure of the Xanthomonas citri phosphate-binding protein PhoX==		==Structure of the Xanthomonas citri phosphate-binding protein PhoX==
-	<StructureSection load='5i84' size='340' side='right' caption='[[5i84]], [[Resolution\|resolution]] 2.98Å' scene=''>	+	<StructureSection load='5i84' size='340' side='right'caption='[[5i84]], [[Resolution\|resolution]] 2.98Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5i84]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I84 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I84 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5i84]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Xanac Xanac]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I84 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I84 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">phoX, XAC1578 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=190486 XANAC])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i84 OCA], [http://pdbe.org/5i84 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i84 RCSB], [http://www.ebi.ac.uk/pdbsum/5i84 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5i84 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i84 OCA], [http://pdbe.org/5i84 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i84 RCSB], [http://www.ebi.ac.uk/pdbsum/5i84 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5i84 ProSAT]</span></td></tr>
	</table>		</table>
Line 25:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Xanac]]
	[[Category: Balan, A]]		[[Category: Balan, A]]
	[[Category: Medrano, F J]]		[[Category: Medrano, F J]]

OCA at 12:23, 7 October 2017

2017-10-07T12:23:57Z

←Older revision		Revision as of 12:23, 7 October 2017
Line 18:		Line 18:
	</div>		</div>
	<div class="pdbe-citations 5i84" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5i84" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Phosphate-binding protein\|Phosphate-binding protein]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 09:38, 19 October 2016

2016-10-19T09:38:04Z

←Older revision		Revision as of 09:38, 19 October 2016
Line 5:		Line 5:
	<table><tr><td colspan='2'>[[5i84]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I84 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I84 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5i84]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I84 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I84 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i84 OCA], [http://pdbe.org/5i84 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i84 RCSB], [http://www.ebi.ac.uk/pdbsum/5i84 PDBsum]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i84 OCA], [http://pdbe.org/5i84 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i84 RCSB], [http://www.ebi.ac.uk/pdbsum/5i84 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5i84 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 15:14, 20 June 2016

2016-06-20T15:14:30Z

←Older revision		Revision as of 15:14, 20 June 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5i84 is ~~ON HOLD~~	+	==Structure of the Xanthomonas citri phosphate-binding protein PhoX==
		+	<StructureSection load='5i84' size='340' side='right' caption='[[5i84]], [[Resolution\|resolution]] 2.98Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5i84]] is a 8 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5I84 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5I84 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5i84 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5i84 OCA], [http://pdbe.org/5i84 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5i84 RCSB], [http://www.ebi.ac.uk/pdbsum/5i84 PDBsum]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/Q8PM55_XANAC Q8PM55_XANAC]] Part of the ABC transporter complex PstSACB involved in phosphate import.[PIRNR:PIRNR002756]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Xanthomonas axonopodis pv. citri (X. citri) is an important bacterium that causes citrus canker disease in plants in Brazil and around the world, leading to significant economic losses. Determination of the physiology and mechanisms of pathogenesis of this bacterium is an important step in the development of strategies for its containment. Phosphate is an essential ion in all microrganisms owing its importance during the synthesis of macromolecules and in gene and protein regulation. Interestingly, X. citri has been identified to present two periplasmic binding proteins that have not been further characterized: PstS, from an ATP-binding cassette for high-affinity uptake and transport of phosphate, and PhoX, which is encoded by an operon that also contains a putative porin for the transport of phosphate. Here, the expression, purification and crystallization of the phosphate-binding protein PhoX and X-ray data collection at 3.0 A resolution are described. Biochemical, biophysical and structural data for this protein will be helpful in the elucidation of its function in phosphate uptake and the physiology of the bacterium.

-	~~Authors: Pegos, V.R~~., Medrano, F.J., ~~Balan, A~~.	+	Crystallization and preliminary X-ray diffraction analysis of the phosphate-binding protein PhoX from Xanthomonas citri.,Pegos VR, Medrano FJ, Balan A Acta Crystallogr F Struct Biol Commun. 2014 Dec 1;70(Pt 12):1604-7. doi:, 10.1107/S2053230X14021840. Epub 2014 Nov 14. PMID:25484207<ref>PMID:25484207</ref>

-	~~Description: Structure~~ of the ~~Xanthomonas citri phosphate-binding protein PhoX~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category: Unreleased Structures]]~~	+	</div>
-	~~[[Category~~: ~~Pegos, V.R]]~~	+	<div class="pdbe-citations 5i84" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Balan, A]]		[[Category: Balan, A]]
-	[[Category: Medrano, F.J]]	+	[[Category: Medrano, F J]]
		+	[[Category: Pegos, V R]]
		+	[[Category: Abc transporter]]
		+	[[Category: Periplasmic-binding protein]]
		+	[[Category: Phosphate-binding protein]]
		+	[[Category: Phox]]
		+	[[Category: Transport protein]]

OCA at 00:16, 11 May 2016

2016-05-11T00:16:57Z

←Older revision		Revision as of 00:16, 11 May 2016
Line 5:		Line 5:
	Authors: Pegos, V.R., Medrano, F.J., Balan, A.		Authors: Pegos, V.R., Medrano, F.J., Balan, A.

-	Description: Structure of the Xanthomonas citri phosphate-binding protein ~~from Pho region~~	+	Description: Structure of the Xanthomonas citri phosphate-binding protein PhoX
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Pegos, V.R]]		[[Category: Pegos, V.R]]
	[[Category: Balan, A]]		[[Category: Balan, A]]
	[[Category: Medrano, F.J]]		[[Category: Medrano, F.J]]

OCA: Protected "5i84" [edit=sysop:move=sysop]

2016-02-26T16:58:05Z

Protected "5i84" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:58, 26 February 2016

OCA: New page: '''Unreleased structure''' The entry 5i84 is ON HOLD Authors: Pegos, V.R., Medrano, F.J., Balan, A. Description: Structure of the Xanthomonas citri phosphate-binding protein from Pho r...

2016-02-26T16:58:03Z

New page: '''Unreleased structure''' The entry 5i84 is ON HOLD Authors: Pegos, V.R., Medrano, F.J., Balan, A. Description: Structure of the Xanthomonas citri phosphate-binding protein from Pho r...

New page

'''Unreleased structure'''

The entry 5i84 is ON HOLD

Authors: Pegos, V.R., Medrano, F.J., Balan, A.

Description: Structure of the Xanthomonas citri phosphate-binding protein from Pho region
[[Category: Unreleased Structures]]
[[Category: Pegos, V.R]]
[[Category: Balan, A]]
[[Category: Medrano, F.J]]