5ili - Revision history

OCA at 14:00, 30 August 2023

2023-08-30T14:00:23Z

←Older revision		Revision as of 14:00, 30 August 2023
Line 3:		Line 3:
	<StructureSection load='5ili' size='340' side='right'caption='[[5ili]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='5ili' size='340' side='right'caption='[[5ili]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ili]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~American_tobacco American tobacco~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ILI OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5ILI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ili]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Nicotiana_tabacum Nicotiana tabacum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ILI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ILI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3CX:(2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC+ACID'>3CX</scene>, <scene name='pdbligand=3FX:(2R)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC+ACID'>3FX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ik0\|5ik0]], [[5ik6\|5ik6]], [[5ik9\|5ik9]], [[5ika\|5ika]], [[5ikh\|5ikh]], [[5il3\|5il3]], [[5il8\|5il8]], [[5ild\|5ild]], [[5ilh\|5ilh]], [[5ilj\|5ilj]], [[5ilk\|5ilk]], [[5ilx\|5ilx]], [[5ily\|5ily]], [[5im1\|5im1]]</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3CX:(2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC+ACID'>3CX</scene>, <scene name='pdbligand=3FX:(2R)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC+ACID'>3FX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">EAS3, EAS4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4097 American tobacco])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ili FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ili OCA], [https://pdbe.org/5ili PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ili RCSB], [https://www.ebi.ac.uk/pdbsum/5ili PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ili ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-epiaristolochene_synthase 5-epiaristolochene synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.3.61 4.2.3.61] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5ili FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ili OCA], [~~http~~://pdbe.org/5ili PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5ili RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5ili PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5ili ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/5EAS_TOBAC 5EAS_TOBAC]] Catalyzes the cyclization of trans,trans-farnesyl diphosphate (FPP) to the bicyclic intermediate 5-epi-aristolochene, initial step in the conversion of FPP to the sesquiterpenoid antifungal phytoalexin capsidiol. Produces germacrene A as an enzyme-bound intermediate that is not released by the enzyme, but is further cyclized to produce the bicyclic 5-epi-aristolochene.	+	[https://www.uniprot.org/uniprot/5EAS_TOBAC 5EAS_TOBAC] Catalyzes the cyclization of trans,trans-farnesyl diphosphate (FPP) to the bicyclic intermediate 5-epi-aristolochene, initial step in the conversion of FPP to the sesquiterpenoid antifungal phytoalexin capsidiol. Produces germacrene A as an enzyme-bound intermediate that is not released by the enzyme, but is further cyclized to produce the bicyclic 5-epi-aristolochene.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: 5-epiaristolochene synthase]]
-	[[Category: American tobacco]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Bowman, M]]	+	[[Category: Nicotiana tabacum]]
-	[[Category: Koo~~, H J~~]]	+	[[Category: Bowman M]]
-	[[Category: Louie~~, G V~~]]	+	[[Category: Koo HJ]]
-	[[Category: Noel~~, J P~~]]	+	[[Category: Louie GV]]
-	[[Category: Xu, Y]]	+	[[Category: Noel JP]]
-	~~[[Category: Capso]]~~	+	[[Category: Xu Y]]
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Tea]]~~	+
-	~~[[Category: Terpene synthase~~]]	+

OCA at 07:23, 3 June 2020

2020-06-03T07:23:13Z

←Older revision		Revision as of 07:23, 3 June 2020
Line 1:		Line 1:

	==Tobacco 5-epi-aristolochene synthase with CAPSO buffer molecule and Mg2+ ions==		==Tobacco 5-epi-aristolochene synthase with CAPSO buffer molecule and Mg2+ ions==
-	<StructureSection load='5ili' size='340' side='right' caption='[[5ili]], [[Resolution\|resolution]] 1.90Å' scene=''>	+	<StructureSection load='5ili' size='340' side='right'caption='[[5ili]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ili]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ILI OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ILI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ili]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/American_tobacco American tobacco]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ILI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5ILI FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3CX:(2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC+ACID'>3CX</scene>, <scene name='pdbligand=3FX:(2R)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC+ACID'>3FX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3CX:(2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC+ACID'>3CX</scene>, <scene name='pdbligand=3FX:(2R)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC+ACID'>3FX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ik0\|5ik0]], [[5ik6\|5ik6]], [[5ik9\|5ik9]], [[5ika\|5ika]], [[5ikh\|5ikh]], [[5il3\|5il3]], [[5il8\|5il8]], [[5ild\|5ild]], [[5ilh\|5ilh]], [[5ilj\|5ilj]], [[5ilk\|5ilk]], [[5ilx\|5ilx]], [[5ily\|5ily]], [[5im1\|5im1]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ik0\|5ik0]], [[5ik6\|5ik6]], [[5ik9\|5ik9]], [[5ika\|5ika]], [[5ikh\|5ikh]], [[5il3\|5il3]], [[5il8\|5il8]], [[5ild\|5ild]], [[5ilh\|5ilh]], [[5ilj\|5ilj]], [[5ilk\|5ilk]], [[5ilx\|5ilx]], [[5ily\|5ily]], [[5im1\|5im1]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">EAS3, EAS4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4097 American tobacco])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-epiaristolochene_synthase 5-epiaristolochene synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.3.61 4.2.3.61] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-epiaristolochene_synthase 5-epiaristolochene synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.3.61 4.2.3.61] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ili FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ili OCA], [http://pdbe.org/5ili PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ili RCSB], [http://www.ebi.ac.uk/pdbsum/5ili PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ili ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ili FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ili OCA], [http://pdbe.org/5ili PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ili RCSB], [http://www.ebi.ac.uk/pdbsum/5ili PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ili ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 14:		Line 15:
	</StructureSection>		</StructureSection>
	[[Category: 5-epiaristolochene synthase]]		[[Category: 5-epiaristolochene synthase]]
		+	[[Category: American tobacco]]
		+	[[Category: Large Structures]]
	[[Category: Bowman, M]]		[[Category: Bowman, M]]
	[[Category: Koo, H J]]		[[Category: Koo, H J]]

OCA at 19:14, 11 March 2017

2017-03-11T19:14:47Z

←Older revision		Revision as of 19:14, 11 March 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5ili is ~~ON HOLD until Paper Publication~~	+	==Tobacco 5-epi-aristolochene synthase with CAPSO buffer molecule and Mg2+ ions==
-		+	<StructureSection load='5ili' size='340' side='right' caption='[[5ili]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~Authors~~: ~~Koo~~, H.J., ~~Louie~~, G.V., Xu, Y., ~~Bowman, M~~., ~~Noel, J~~.P.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5ili]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ILI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ILI FirstGlance]. <br>
-	~~Description~~: ~~Tobacco~~ 5-epi-aristolochene synthase ~~with CAPSO buffer molecule and Mg2+ ions~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=3CX:(2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC+ACID'>3CX</scene>, <scene name='pdbligand=3FX:(2R)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONIC+ACID'>3FX</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5ik0\|5ik0]], [[5ik6\|5ik6]], [[5ik9\|5ik9]], [[5ika\|5ika]], [[5ikh\|5ikh]], [[5il3\|5il3]], [[5il8\|5il8]], [[5ild\|5ild]], [[5ilh\|5ilh]], [[5ilj\|5ilj]], [[5ilk\|5ilk]], [[5ilx\|5ilx]], [[5ily\|5ily]], [[5im1\|5im1]]</td></tr>
-	[[Category: Louie, G.V]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/5-epiaristolochene_synthase 5-epiaristolochene synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.3.61 4.2.3.61] </span></td></tr>
-	[[Category: ~~Koo~~, H.J]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ili FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ili OCA], [http://pdbe.org/5ili PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ili RCSB], [http://www.ebi.ac.uk/pdbsum/5ili PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ili ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/5EAS_TOBAC 5EAS_TOBAC]] Catalyzes the cyclization of trans,trans-farnesyl diphosphate (FPP) to the bicyclic intermediate 5-epi-aristolochene, initial step in the conversion of FPP to the sesquiterpenoid antifungal phytoalexin capsidiol. Produces germacrene A as an enzyme-bound intermediate that is not released by the enzyme, but is further cyclized to produce the bicyclic 5-epi-aristolochene.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: 5-epiaristolochene synthase]]
		+	[[Category: Bowman, M]]
		+	[[Category: Koo, H J]]
		+	[[Category: Louie, G V]]
		+	[[Category: Noel, J P]]
	[[Category: Xu, Y]]		[[Category: Xu, Y]]
-	[[Category: ~~Bowman, M~~]]	+	[[Category: Capso]]
-	[[Category: ~~Noel, J.P~~]]	+	[[Category: Lyase]]
		+	[[Category: Tea]]
		+	[[Category: Terpene synthase]]

OCA: Protected "5ili" [edit=sysop:move=sysop]

2016-05-11T00:36:59Z

Protected "5ili" [edit=sysop:move=sysop]

←Older revision

Revision as of 00:36, 11 May 2016

OCA: New page: '''Unreleased structure''' The entry 5ili is ON HOLD until Paper Publication Authors: Koo, H.J., Louie, G.V., Xu, Y., Bowman, M., Noel, J.P. Description: Tobacco 5-epi-aristolochene sy...

2016-05-11T00:36:58Z

New page: '''Unreleased structure''' The entry 5ili is ON HOLD until Paper Publication Authors: Koo, H.J., Louie, G.V., Xu, Y., Bowman, M., Noel, J.P. Description: Tobacco 5-epi-aristolochene sy...

New page

'''Unreleased structure'''

The entry 5ili is ON HOLD until Paper Publication

Authors: Koo, H.J., Louie, G.V., Xu, Y., Bowman, M., Noel, J.P.

Description: Tobacco 5-epi-aristolochene synthase with CAPSO buffer molecule and Mg2+ ions
[[Category: Unreleased Structures]]
[[Category: Louie, G.V]]
[[Category: Koo, H.J]]
[[Category: Xu, Y]]
[[Category: Bowman, M]]
[[Category: Noel, J.P]]