5j6v - Revision history

OCA at 10:11, 14 June 2023

2023-06-14T10:11:21Z

←Older revision		Revision as of 10:11, 14 June 2023
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	==NMR structures of hylin-a1 analogs: Hylin-D==		==NMR structures of hylin-a1 analogs: Hylin-D==
-	<StructureSection load='5j6v' size='340' side='right'caption='[[5j6v~~]], [[NMR_Ensembles_of_Models \| 10 NMR models~~]]' scene=''>	+	<StructureSection load='5j6v' size='340' side='right'caption='[[5j6v]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5j6v]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J6V OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5J6V FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5j6v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Boana_albopunctata Boana albopunctata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J6V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5J6V FirstGlance]. <br>
-	</td></tr><tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>~~</td></tr>~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5j6t\|5j6t]], [[5j6w\|5j6w]]~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5j6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j6v OCA], [https://pdbe.org/5j6v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5j6v RCSB], [https://www.ebi.ac.uk/pdbsum/5j6v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5j6v ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5j6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j6v OCA], [~~http~~://pdbe.org/5j6v PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5j6v RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5j6v PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5j6v ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/ALBO1_BOAAL ALBO1_BOAAL]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Boana albopunctata]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Crusca, E]]	+	[[Category: Crusca Jr E]]
-	[[Category: Liao~~, L M~~]]	+	[[Category: Liao LM]]
-	[[Category: Matos~~, C O~~]]	+	[[Category: Matos CO]]
-	[[Category: Oliveira~~, A L]]~~	+	[[Category: Oliveira AL]]
-	~~[[Category: Antimicrobial peptide]]~~	+
-	~~[[Category: Antimicrobial protein]]~~	+
-	~~[[Category: Dpc]]~~	+
-	~~[[Category: Hylin-a1 analogue~~]]	+

OCA at 06:23, 17 April 2019

2019-04-17T06:23:32Z

←Older revision		Revision as of 06:23, 17 April 2019
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	==NMR structures of hylin-a1 analogs: Hylin-D==		==NMR structures of hylin-a1 analogs: Hylin-D==
-	<StructureSection load='5j6v' size='340' side='right' caption='[[5j6v]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>	+	<StructureSection load='5j6v' size='340' side='right'caption='[[5j6v]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5j6v]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J6V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5J6V FirstGlance]. <br>		<table><tr><td colspan='2'>[[5j6v]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J6V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5J6V FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Crusca, E]]		[[Category: Crusca, E]]
	[[Category: Liao, L M]]		[[Category: Liao, L M]]

OCA at 09:09, 17 May 2017

2017-05-17T09:09:56Z

←Older revision		Revision as of 09:09, 17 May 2017
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	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5j6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j6v OCA], [http://pdbe.org/5j6v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j6v RCSB], [http://www.ebi.ac.uk/pdbsum/5j6v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5j6v ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5j6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j6v OCA], [http://pdbe.org/5j6v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j6v RCSB], [http://www.ebi.ac.uk/pdbsum/5j6v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5j6v ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Antimicrobial peptides are recognized candidates with pharmaceutical potential against epidemic emerging multi-drug resistant bacteria. In this study, we use nuclear magnetic resonance spectroscopy and molecular dynamics simulations to determine the unknown structure and evaluate the interaction with dodecylphosphatidylcholine (DPC) and sodium dodecylsulphate (SDS) micelles with three W6 -Hylin-a1 analogs antimicrobial peptides (HyAc, HyK, and HyD). The HyAc, HyK, and HyD bound to DPC micelles are all formed by a unique alpha-helix structure. Moreover, all peptides reach the DPC micelles' core, which thus suggests that the N-terminal modifications do not influence the interaction with zwiterionic surfaces. On the other hand, only HyAc and HyK peptides are able to penetrate the SDS micelle core while HyD remains always at its surface. The stability of the alpha-helical structure, after peptide-membrane interaction, can also be important to the second step of peptide insertion into the membrane hydrophobic core during permeabilization. Copyright (c) 2017 European Peptide Society and John Wiley & Sons, Ltd.
		+
		+	NMR structures and molecular dynamics simulation of hylin-a1 peptide analogs interacting with micelles.,Crusca E Jr, Camara AS, Matos CO, Marchetto R, Cilli EM, Liao LM, Lima de Oliveira A J Pept Sci. 2017 Jun;23(6):421-430. doi: 10.1002/psc.3002. Epub 2017 Apr 20. PMID:28425152<ref>PMID:28425152</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5j6v" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 11:42, 12 April 2017

2017-04-12T11:42:56Z

←Older revision		Revision as of 11:42, 12 April 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5j6v is ~~ON HOLD until Paper Publication~~	+	==NMR structures of hylin-a1 analogs: Hylin-D==
-		+	<StructureSection load='5j6v' size='340' side='right' caption='[[5j6v]], [[NMR_Ensembles_of_Models \| 10 NMR models]]' scene=''>
-	~~Authors~~: ~~Crusca Jr~~., E., ~~Matos~~, C.O., ~~Liao, L~~.M., ~~Oliveira, A~~.L.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5j6v]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5J6V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5J6V FirstGlance]. <br>
-	~~Description: NMR structures of hylin-a1 analogs: Hylin-D~~	+	</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5j6t\|5j6t]], [[5j6w\|5j6w]]</td></tr>
-	[[Category: Liao, L.M]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5j6v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5j6v OCA], [http://pdbe.org/5j6v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5j6v RCSB], [http://www.ebi.ac.uk/pdbsum/5j6v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5j6v ProSAT]</span></td></tr>
-	[[Category: Oliveira, A.L]]	+	</table>
-	[[Category: E]]	+	__TOC__
-	[[Category: ~~Crusca Jr~~]]	+	</StructureSection>
-	[[Category: ~~Matos, C.O~~]]	+	[[Category: Crusca, E]]
		+	[[Category: Liao, L M]]
		+	[[Category: Matos, C O]]
		+	[[Category: Oliveira, A L]]
		+	[[Category: Antimicrobial peptide]]
		+	[[Category: Antimicrobial protein]]
		+	[[Category: Dpc]]
		+	[[Category: Hylin-a1 analogue]]

OCA at 09:48, 9 March 2017

2017-03-09T09:48:01Z

←Older revision		Revision as of 09:48, 9 March 2017
Line 7:		Line 7:
	Description: NMR structures of hylin-a1 analogs: Hylin-D		Description: NMR structures of hylin-a1 analogs: Hylin-D
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Liao, L.M]]
	[[Category: Oliveira, A.L]]		[[Category: Oliveira, A.L]]
	[[Category: E]]		[[Category: E]]
-	[[Category: Liao, L.M]]
	[[Category: Crusca Jr]]		[[Category: Crusca Jr]]
	[[Category: Matos, C.O]]		[[Category: Matos, C.O]]

OCA at 13:10, 1 June 2016

2016-06-01T13:10:42Z

←Older revision		Revision as of 13:10, 1 June 2016
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5j6v is ON HOLD	+	The entry 5j6v is ON HOLD until Paper Publication

	Authors: Crusca Jr., E., Matos, C.O., Liao, L.M., Oliveira, A.L.		Authors: Crusca Jr., E., Matos, C.O., Liao, L.M., Oliveira, A.L.

OCA: Protected "5j6v" [edit=sysop:move=sysop]

2016-05-11T01:35:18Z

Protected "5j6v" [edit=sysop:move=sysop]

←Older revision

Revision as of 01:35, 11 May 2016

OCA: New page: '''Unreleased structure''' The entry 5j6v is ON HOLD Authors: Crusca Jr., E., Matos, C.O., Liao, L.M., Oliveira, A.L. Description: NMR structures of hylin-a1 analogs: Hylin-D [[Categor...

2016-05-11T01:35:16Z

New page: '''Unreleased structure''' The entry 5j6v is ON HOLD Authors: Crusca Jr., E., Matos, C.O., Liao, L.M., Oliveira, A.L. Description: NMR structures of hylin-a1 analogs: Hylin-D [[Categor...

New page

'''Unreleased structure'''

The entry 5j6v is ON HOLD

Authors: Crusca Jr., E., Matos, C.O., Liao, L.M., Oliveira, A.L.

Description: NMR structures of hylin-a1 analogs: Hylin-D
[[Category: Unreleased Structures]]
[[Category: Oliveira, A.L]]
[[Category: E]]
[[Category: Liao, L.M]]
[[Category: Crusca Jr]]
[[Category: Matos, C.O]]