5jmg - Revision history

OCA at 18:58, 20 September 2023

2023-09-20T18:58:42Z

←Older revision		Revision as of 18:58, 20 September 2023
Line 3:		Line 3:
	<StructureSection load='5jmg' size='340' side='right'caption='[[5jmg]], [[Resolution\|resolution]] 1.85Å' scene=''>		<StructureSection load='5jmg' size='340' side='right'caption='[[5jmg]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jmg]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JMG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5JMG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jmg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JMG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JMG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=IR:IRIDIUM+ION'>IR</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.85Å</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.5 3.1.27.5] </span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=IR:IRIDIUM+ION'>IR</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5jmg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jmg OCA], [~~http~~://pdbe.org/5jmg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jmg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jmg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jmg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jmg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jmg OCA], [https://pdbe.org/5jmg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jmg RCSB], [https://www.ebi.ac.uk/pdbsum/5jmg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jmg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/RNAS1_BOVIN RNAS1_BOVIN]] Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.<ref>PMID:7479688</ref>	+	[https://www.uniprot.org/uniprot/RNAS1_BOVIN RNAS1_BOVIN] Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.<ref>PMID:7479688</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 28:		Line 28:
	[[Category: Bos taurus]]		[[Category: Bos taurus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Pancreatic ribonuclease]]~~	+	[[Category: Caterino M]]
-	[[Category: Caterino, M]]	+	[[Category: Ferraro G]]
-	[[Category: Ferraro, G]]	+	[[Category: Merlino A]]
-	[[Category: Merlino, A]]	+	[[Category: Petruk AA]]
-	[[Category: Petruk~~, A A~~]]	+	[[Category: Vergara A]]
-	[[Category: Vergara, A]]	+
-	~~[[Category: Corm]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Iridium compound]]~~	+
-	~~[[Category: Protein iridium interaction~~]]	+

OCA at 07:55, 10 June 2020

2020-06-10T07:55:21Z

←Older revision		Revision as of 07:55, 10 June 2020
Line 1:		Line 1:

	==X-ray structure of the complex between bovine pancreatic ribonuclease and pentachlorocarbonyliridate(III) (4 days of soaking)==		==X-ray structure of the complex between bovine pancreatic ribonuclease and pentachlorocarbonyliridate(III) (4 days of soaking)==
-	<StructureSection load='5jmg' size='340' side='right' caption='[[5jmg]], [[Resolution\|resolution]] 1.85Å' scene=''>	+	<StructureSection load='5jmg' size='340' side='right'caption='[[5jmg]], [[Resolution\|resolution]] 1.85Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jmg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JMG OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JMG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jmg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JMG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5JMG FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=IR:IRIDIUM+ION'>IR</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=IR:IRIDIUM+ION'>IR</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.5 3.1.27.5] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.5 3.1.27.5] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jmg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jmg OCA], [http://pdbe.org/5jmg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jmg RCSB], [http://www.ebi.ac.uk/pdbsum/5jmg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jmg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5jmg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jmg OCA], [http://pdbe.org/5jmg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jmg RCSB], [http://www.ebi.ac.uk/pdbsum/5jmg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jmg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 5jmg" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5jmg" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ribonuclease 3D structures\|Ribonuclease 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 24:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Bos taurus]]		[[Category: Bos taurus]]
		+	[[Category: Large Structures]]
	[[Category: Pancreatic ribonuclease]]		[[Category: Pancreatic ribonuclease]]
	[[Category: Caterino, M]]		[[Category: Caterino, M]]

OCA at 15:45, 27 July 2016

2016-07-27T15:45:42Z

←Older revision		Revision as of 15:45, 27 July 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5jmg is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==X-ray structure of the complex between bovine pancreatic ribonuclease and pentachlorocarbonyliridate(III) (4 days of soaking)==
		+	<StructureSection load='5jmg' size='340' side='right' caption='[[5jmg]], [[Resolution\|resolution]] 1.85Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5jmg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JMG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JMG FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CMO:CARBON+MONOXIDE'>CMO</scene>, <scene name='pdbligand=IR:IRIDIUM+ION'>IR</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pancreatic_ribonuclease Pancreatic ribonuclease], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.27.5 3.1.27.5] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jmg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jmg OCA], [http://pdbe.org/5jmg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jmg RCSB], [http://www.ebi.ac.uk/pdbsum/5jmg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jmg ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/RNAS1_BOVIN RNAS1_BOVIN]] Endonuclease that catalyzes the cleavage of RNA on the 3' side of pyrimidine nucleotides. Acts on single stranded and double stranded RNA.<ref>PMID:7479688</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A combination of mass spectrometry, Raman microspectroscopy, circular dichroism and X-ray crystallography has been used to obtain detailed information on the reaction of an iridium-based CO-releasing molecule (Ir-CORM), Cs2IrCl5CO, with a model protein, bovine pancreatic ribonuclease. The results show that Ir-compound fragments bind to the N-terminal amine and close to histidine and methionine side chains, and the CO ligand is retained for a long time. The data provide helpful information for identifying protein targets for Ir-CORMs and for studying the mechanism that allows them to exhibit their interesting biological properties.

-	~~Authors:~~ Caterino, M., Petruk~~, A.A.~~, Vergara, A., Ferraro, G., ~~Merlino~~, A.	+	Mapping the protein-binding sites for iridium(iii)-based CO-releasing molecules.,Caterino M, Petruk AA, Vergara A, Ferraro G, Marasco D, Doctorovich F, Estrin DA, Merlino A Dalton Trans. 2016 Jul 26;45(30):12206-12214. PMID:27411388<ref>PMID:27411388</ref>

-	~~Description: X-ray structure~~ of the ~~complex between bovine pancreatic ribonuclease and pentachlorocarbonyliridate(III) (4 days~~ of ~~soaking)~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5jmg" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Bos taurus]]
		+	[[Category: Pancreatic ribonuclease]]
		+	[[Category: Caterino, M]]
	[[Category: Ferraro, G]]		[[Category: Ferraro, G]]
	[[Category: Merlino, A]]		[[Category: Merlino, A]]
-	[[Category: ~~Caterino~~, M]]	+	[[Category: Petruk, A A]]
	[[Category: Vergara, A]]		[[Category: Vergara, A]]
-	[[Category: ~~Petruk, A.A~~]]	+	[[Category: Corm]]
		+	[[Category: Hydrolase]]
		+	[[Category: Iridium compound]]
		+	[[Category: Protein iridium interaction]]

OCA at 13:34, 1 June 2016

2016-06-01T13:34:20Z

←Older revision		Revision as of 13:34, 1 June 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5jmg is ON HOLD	+	The entry 5jmg is ON HOLD until Paper Publication

	Authors: Caterino, M., Petruk, A.A., Vergara, A., Ferraro, G., Merlino, A.		Authors: Caterino, M., Petruk, A.A., Vergara, A., Ferraro, G., Merlino, A.

OCA: Protected "5jmg" [edit=sysop:move=sysop]

2016-05-11T02:18:48Z

Protected "5jmg" [edit=sysop:move=sysop]

←Older revision

Revision as of 02:18, 11 May 2016

OCA: New page: '''Unreleased structure''' The entry 5jmg is ON HOLD Authors: Caterino, M., Petruk, A.A., Vergara, A., Ferraro, G., Merlino, A. Description: X-ray structure of the complex between bovi...

2016-05-11T02:18:47Z

New page: '''Unreleased structure''' The entry 5jmg is ON HOLD Authors: Caterino, M., Petruk, A.A., Vergara, A., Ferraro, G., Merlino, A. Description: X-ray structure of the complex between bovi...

New page

'''Unreleased structure'''

The entry 5jmg is ON HOLD

Authors: Caterino, M., Petruk, A.A., Vergara, A., Ferraro, G., Merlino, A.

Description: X-ray structure of the complex between bovine pancreatic ribonuclease and pentachlorocarbonyliridate(III) (4 days of soaking)
[[Category: Unreleased Structures]]
[[Category: Ferraro, G]]
[[Category: Merlino, A]]
[[Category: Caterino, M]]
[[Category: Vergara, A]]
[[Category: Petruk, A.A]]