5jst - Revision history

OCA at 19:04, 20 September 2023

2023-09-20T19:04:45Z

←Older revision		Revision as of 19:04, 20 September 2023
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	<StructureSection load='5jst' size='340' side='right'caption='[[5jst]], [[Resolution\|resolution]] 2.20Å' scene=''>		<StructureSection load='5jst' size='340' side='right'caption='[[5jst]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jst]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Ecoli Ecoli~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JST OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5JST FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jst]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12] and [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_YJM789 Saccharomyces cerevisiae YJM789]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JST OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JST FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=~~GOL~~:~~GLYCEROL~~'>~~GOL~~</scene>, <scene name='pdbligand=~~MAL~~:~~MALTOSE~~'>~~MAL~~</scene><~~/td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.199Å</td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">MDV1, FIS2, GAG3, NET2, SCY_3176 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PRD_900001:alpha-maltose'>PRD_900001</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5jst FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jst OCA], [~~http~~://pdbe.org/5jst PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jst RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jst PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jst ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jst FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jst OCA], [https://pdbe.org/5jst PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jst RCSB], [https://www.ebi.ac.uk/pdbsum/5jst PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jst ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI]] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.	+	[https://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.[https://www.uniprot.org/uniprot/MDV1_YEAS7 MDV1_YEAS7] Involved in mitochondrial fission. Has a partially redundant function to CAF4 in acting as an adapter protein, binding to FIS1 on the mitochondrial outer membrane and recruiting the dynamin-like GTPase DNM1 to form mitochondrial fission complexes. Formation of these complexes is required to promote constriction and fission of the mitochondrial compartment at a late step in mitochondrial division (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Ecoli~~]]	+	[[Category: Escherichia coli K-12]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Kim, B W~~]]	+	[[Category: Saccharomyces cerevisiae YJM789]]
-	[[Category: ~~Song, H K]]~~	+	[[Category: Kim B-W]]
-	~~[[Category: Coiled~~-~~coil~~]]	+	[[Category: Song HK]]
-	[[Category: ~~Mbp]]~~	+
-	~~[[Category: Protein binding]]~~	+
-	~~[[Category: Ser~~]]	+

OCA at 11:36, 17 June 2020

2020-06-17T11:36:47Z

←Older revision		Revision as of 11:36, 17 June 2020
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	==MBP fused MDV1 coiled coil==		==MBP fused MDV1 coiled coil==
-	<StructureSection load='5jst' size='340' side='right' caption='[[5jst]], [[Resolution\|resolution]] 2.20Å' scene=''>	+	<StructureSection load='5jst' size='340' side='right'caption='[[5jst]], [[Resolution\|resolution]] 2.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jst]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JST OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JST FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jst]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JST OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5JST FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAL:MALTOSE'>MAL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAL:MALTOSE'>MAL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jst FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jst OCA], [http://pdbe.org/5jst PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jst RCSB], [http://www.ebi.ac.uk/pdbsum/5jst PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jst ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MDV1, FIS2, GAG3, NET2, SCY_3176 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5jst FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jst OCA], [http://pdbe.org/5jst PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jst RCSB], [http://www.ebi.ac.uk/pdbsum/5jst PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jst ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Ecoli]]
		+	[[Category: Large Structures]]
	[[Category: Kim, B W]]		[[Category: Kim, B W]]
	[[Category: Song, H K]]		[[Category: Song, H K]]

OCA at 16:15, 22 March 2017

2017-03-22T16:15:52Z

←Older revision		Revision as of 16:15, 22 March 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5jst is ~~ON HOLD until Paper~~ Publication	+	==MBP fused MDV1 coiled coil==
		+	<StructureSection load='5jst' size='340' side='right' caption='[[5jst]], [[Resolution\|resolution]] 2.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5jst]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JST OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JST FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MAL:MALTOSE'>MAL</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jst FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jst OCA], [http://pdbe.org/5jst PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jst RCSB], [http://www.ebi.ac.uk/pdbsum/5jst PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jst ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MALE_ECOLI MALE_ECOLI]] Involved in the high-affinity maltose membrane transport system MalEFGK. Initial receptor for the active transport of and chemotaxis toward maltooligosaccharides.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The coiled-coil (CC) domain is a very important structural unit of proteins that plays critical roles in various biological functions. The major oligomeric state of CCs is a dimer, which can be either parallel or antiparallel. The orientation of each alpha-helix in a CC domain is critical for the molecular function of CC-containing proteins, but cannot be determined easily by sequence-based prediction. We developed a biochemical method for assessing differences between parallel and antiparallel CC homodimers and named it ACCORD (Assessment tool for homodimeric Coiled-Coil ORientation Decision). To validate this technique, we applied it to 15 different CC proteins with known structures, and the ACCORD results identified these proteins well, especially with long CCs. Furthermore, ACCORD was able to accurately determine the orientation of a CC domain of unknown directionality that was subsequently confirmed by X-ray crystallography and small angle X-ray scattering. Thus, ACCORD can be used as a tool to determine CC directionality to supplement the results of in silico prediction.

-	~~Authors~~:	+	ACCORD: an assessment tool to determine the orientation of homodimeric coiled-coils.,Kim BW, Jung YO, Kim MK, Kwon DH, Park SH, Kim JH, Kuk YB, Oh SJ, Kim L, Kim BH, Yang WS, Song HK Sci Rep. 2017 Mar 7;7:43318. doi: 10.1038/srep43318. PMID:28266564<ref>PMID:28266564</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5jst" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Kim, B W]]
		+	[[Category: Song, H K]]
		+	[[Category: Coiled-coil]]
		+	[[Category: Mbp]]
		+	[[Category: Protein binding]]
		+	[[Category: Ser]]

OCA at 23:39, 12 July 2016

2016-07-12T23:39:12Z

←Older revision		Revision as of 23:39, 12 July 2016
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5jst is ON HOLD	+	The entry 5jst is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5jst" [edit=sysop:move=sysop]

2016-06-01T13:47:23Z

Protected "5jst" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:47, 1 June 2016

OCA: New page: '''Unreleased structure''' The entry 5jst is ON HOLD Authors: Description: Category: Unreleased Structures

2016-06-01T13:47:21Z

New page: '''Unreleased structure''' The entry 5jst is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5jst is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]