5jvv - Revision history

OCA at 19:12, 20 September 2023

2023-09-20T19:12:01Z

←Older revision		Revision as of 19:12, 20 September 2023
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	<StructureSection load='5jvv' size='340' side='right'caption='[[5jvv]], [[Resolution\|resolution]] 1.59Å' scene=''>		<StructureSection load='5jvv' size='340' side='right'caption='[[5jvv]], [[Resolution\|resolution]] 1.59Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jvv]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Paecilomyces_sp._'thermophila' Paecilomyces sp. 'thermophila']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5JVV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jvv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Paecilomyces_sp._'thermophila' Paecilomyces sp. 'thermophila']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5JVV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5jvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvv OCA], [~~http~~://pdbe.org/5jvv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5jvv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5jvv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvv ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.589Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5jvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvv OCA], [https://pdbe.org/5jvv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5jvv RCSB], [https://www.ebi.ac.uk/pdbsum/5jvv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvv ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A1S4NYE9_9EURO A0A1S4NYE9_9EURO]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Paecilomyces sp. 'thermophila']]		[[Category: Paecilomyces sp. 'thermophila']]
-	[[Category: Jiang, Z]]	+	[[Category: Jiang Z]]
-	[[Category: Qin, Z]]	+	[[Category: Qin Z]]
-	[[Category: Yan, Q]]	+	[[Category: Yan Q]]
-	[[Category: Yang, S]]	+	[[Category: Yang S]]
-	~~[[Category: 3-glucosyltransferase]]~~	+
-	~~[[Category: Beta-1]]~~	+
-	~~[[Category: Glucoside hydrolase]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 11:41, 17 June 2020

2020-06-17T11:41:54Z

←Older revision		Revision as of 11:41, 17 June 2020
Line 1:		Line 1:

	==Crystal structure and characterization an elongating GH family 16 beta-1,3-glucosyltransferase==		==Crystal structure and characterization an elongating GH family 16 beta-1,3-glucosyltransferase==
-	<StructureSection load='5jvv' size='340' side='right' caption='[[5jvv]], [[Resolution\|resolution]] 1.59Å' scene=''>	+	<StructureSection load='5jvv' size='340' side='right'caption='[[5jvv]], [[Resolution\|resolution]] 1.59Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5jvv]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVV OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5JVV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5jvv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Paecilomyces_sp._'thermophila' Paecilomyces sp. 'thermophila']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVV OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5JVV FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5jvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvv OCA], [http://pdbe.org/5jvv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jvv RCSB], [http://www.ebi.ac.uk/pdbsum/5jvv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvv ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5jvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvv OCA], [http://pdbe.org/5jvv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jvv RCSB], [http://www.ebi.ac.uk/pdbsum/5jvv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvv ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Paecilomyces sp. 'thermophila']]
	[[Category: Jiang, Z]]		[[Category: Jiang, Z]]
	[[Category: Qin, Z]]		[[Category: Qin, Z]]

OCA at 11:11, 1 February 2017

2017-02-01T11:11:43Z

←Older revision		Revision as of 11:11, 1 February 2017
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	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvv OCA], [http://pdbe.org/5jvv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jvv RCSB], [http://www.ebi.ac.uk/pdbsum/5jvv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvv ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvv OCA], [http://pdbe.org/5jvv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jvv RCSB], [http://www.ebi.ac.uk/pdbsum/5jvv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvv ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Carbohydrates are complex macromolecules in biological metabolism. Enzymatic synthesis of carbohydrates is recognized as powerful tool to overcome the problems associated with large-scale synthesis of carbohydrates. Novel enzymes with significant transglycosylation ability are still in great demand in glycobiology studies. Here we report a novel glycoside hydrolase (GH) family 16 elongating beta-transglycosylase from Paecilomyces thermophila (PtBgt16A), which efficiently catalyzes the synthesis of higher polymeric oligosaccharides using beta-1,3/1,4 oligosaccharides as donor/acceptor substrates. Further structural information reveals that PtBgt16A own a binding pocket around the -1 subsite. The catalytic mechanism of PtBgt16A is partly similar to an exo- glycoside hydrolase, which cleaves the substrate from the non-reducing end one by one. However, PtBgt16A releases the reducing end product and uses remainder glucosyl as transglycosylation donor. This catalytic mechanism has similarity with the catalytic mode of amylosucrase, which leads the transglycosylation products gradually extend by one glucose unit. PtBgt16A thus has the potential to be a tool enzyme for the enzymatic synthesis of new beta-oligosaccharides and glycoconjugates.
		+
		+	Catalytic mechanism of a novel glycoside hydrolase family 16 ''elongating '' beta - transglycosylase.,Qin Z, Yang S, Zhao L, You X, Yan Q, Jiang Z J Biol Chem. 2016 Dec 12. pii: jbc.M116.762419. PMID:27956553<ref>PMID:27956553</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5jvv" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 19:18, 15 December 2016

2016-12-15T19:18:30Z

←Older revision		Revision as of 19:18, 15 December 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 5jvv is ON HOLD~~	+	==Crystal structure and characterization an elongating GH family 16 beta-1,3-glucosyltransferase==
-		+	<StructureSection load='5jvv' size='340' side='right' caption='[[5jvv]], [[Resolution\|resolution]] 1.59Å' scene=''>
-	~~Authors: Qin, Z., Yan, Q., Yang, S., Jiang, Z.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5jvv]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5JVV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5JVV FirstGlance]. <br>
-	~~Description:~~ Crystal structure and characterization an elongating GH family 16 beta-1,3-glucosyltransferase	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5jvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5jvv OCA], [http://pdbe.org/5jvv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5jvv RCSB], [http://www.ebi.ac.uk/pdbsum/5jvv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5jvv ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Jiang, Z]]		[[Category: Jiang, Z]]
	[[Category: Qin, Z]]		[[Category: Qin, Z]]
		+	[[Category: Yan, Q]]
	[[Category: Yang, S]]		[[Category: Yang, S]]
-	[[Category: ~~Yan, Q~~]]	+	[[Category: 3-glucosyltransferase]]
		+	[[Category: Beta-1]]
		+	[[Category: Glucoside hydrolase]]
		+	[[Category: Transferase]]

OCA: Protected "5jvv" [edit=sysop:move=sysop]

2016-06-01T13:55:11Z

Protected "5jvv" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:55, 1 June 2016

OCA: New page: '''Unreleased structure''' The entry 5jvv is ON HOLD Authors: Qin, Z., Yan, Q., Yang, S., Jiang, Z. Description: Crystal structure and characterization an elongating GH family 16 beta-...

2016-06-01T13:55:10Z

New page: '''Unreleased structure''' The entry 5jvv is ON HOLD Authors: Qin, Z., Yan, Q., Yang, S., Jiang, Z. Description: Crystal structure and characterization an elongating GH family 16 beta-...

New page

'''Unreleased structure'''

The entry 5jvv is ON HOLD

Authors: Qin, Z., Yan, Q., Yang, S., Jiang, Z.

Description: Crystal structure and characterization an elongating GH family 16 beta-1,3-glucosyltransferase
[[Category: Unreleased Structures]]
[[Category: Jiang, Z]]
[[Category: Qin, Z]]
[[Category: Yang, S]]
[[Category: Yan, Q]]