5k7o - Revision history

OCA at 10:42, 27 September 2023

2023-09-27T10:42:41Z

←Older revision		Revision as of 10:42, 27 September 2023
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	<StructureSection load='5k7o' size='340' side='right'caption='[[5k7o]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='5k7o' size='340' side='right'caption='[[5k7o]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5k7o]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K7O OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5K7O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5k7o]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K7O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5K7O FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~, ~~<scene name='pdbligand=NA:SODIUM+ION'>NA</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron crystallography, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[5k7n\|5k7n]], [[5k7p\|5k7p]], [[5k7q\|5k7q]], [[5k7r\|5k7r]], [[5k7s\|5k7s]], [[5k7t\|5k7t]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-	~~<tr~~ id~~='activity'><td class~~="~~sblockLbl~~"><~~b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks~~'>~~[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5k7o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k7o OCA], [https://pdbe.org/5k7o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5k7o RCSB], [https://www.ebi.ac.uk/pdbsum/5k7o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5k7o ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5k7o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k7o OCA], [~~http~~://pdbe.org/5k7o PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5k7o RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5k7o PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5k7o ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 29:		Line 28:
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Cascio D]]
-	[[Category: Cascio, D]]	+	[[Category: Eisenberg D]]
-	~~[[Category: Cruz, M J.de la~~]]	+	[[Category: Gonen T]]
-	[[Category: Eisenberg, D]]	+	[[Category: Hattne J]]
-	[[Category: Gonen, T]]	+	[[Category: Reyes FE]]
-	[[Category: Hattne, J]]	+	[[Category: Rodriguez J]]
-	[[Category: Reyes~~, F E~~]]	+	[[Category: Sawaya MR]]
-	[[Category: Rodriguez, J]]	+	[[Category: Seidler P]]
-	[[Category: Sawaya~~, M R~~]]	+	[[Category: Shi D]]
-	[[Category: Seidler, P]]	+	[[Category: De la Cruz MJ]]
-	[[Category: Shi, D]]	+
-	[[Category: ~~Hydrolase~~]]	+

OCA at 09:24, 1 July 2020

2020-07-01T09:24:53Z

←Older revision		Revision as of 09:24, 1 July 2020
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	==MicroED structure of lysozyme at 1.8 A resolution==		==MicroED structure of lysozyme at 1.8 A resolution==
-	<StructureSection load='5k7o' size='340' side='right' caption='[[5k7o]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='5k7o' size='340' side='right'caption='[[5k7o]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5k7o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K7O OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5K7O FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5k7o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K7O OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5K7O FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5k7n\|5k7n]], [[5k7p\|5k7p]], [[5k7q\|5k7q]], [[5k7r\|5k7r]], [[5k7s\|5k7s]], [[5k7t\|5k7t]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5k7n\|5k7n]], [[5k7p\|5k7p]], [[5k7q\|5k7q]], [[5k7r\|5k7r]], [[5k7s\|5k7s]], [[5k7t\|5k7t]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5k7o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k7o OCA], [http://pdbe.org/5k7o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k7o RCSB], [http://www.ebi.ac.uk/pdbsum/5k7o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5k7o ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5k7o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k7o OCA], [http://pdbe.org/5k7o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k7o RCSB], [http://www.ebi.ac.uk/pdbsum/5k7o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5k7o ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 28:		Line 28:
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Cascio, D]]		[[Category: Cascio, D]]

OCA at 06:23, 22 August 2018

2018-08-22T06:23:53Z

←Older revision		Revision as of 06:23, 22 August 2018
Line 20:		Line 20:
	</div>		</div>
	<div class="pdbe-citations 5k7o" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5k7o" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 13:20, 5 April 2017

2017-04-05T13:20:06Z

←Older revision		Revision as of 13:20, 5 April 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5k7o is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==MicroED structure of lysozyme at 1.8 A resolution==
		+	<StructureSection load='5k7o' size='340' side='right' caption='[[5k7o]], [[Resolution\|resolution]] 1.80Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5k7o]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5K7O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5K7O FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5k7n\|5k7n]], [[5k7p\|5k7p]], [[5k7q\|5k7q]], [[5k7r\|5k7r]], [[5k7s\|5k7s]], [[5k7t\|5k7t]]</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5k7o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5k7o OCA], [http://pdbe.org/5k7o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5k7o RCSB], [http://www.ebi.ac.uk/pdbsum/5k7o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5k7o ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Traditionally, crystallographic analysis of macromolecules has depended on large, well-ordered crystals, which often require significant effort to obtain. Even sizable crystals sometimes suffer from pathologies that render them inappropriate for high-resolution structure determination. Here we show that fragmentation of large, imperfect crystals into microcrystals or nanocrystals can provide a simple path for high-resolution structure determination by the cryoEM method MicroED and potentially by serial femtosecond crystallography.

-	~~Authors~~:	+	Atomic-resolution structures from fragmented protein crystals with the cryoEM method MicroED.,de la Cruz MJ, Hattne J, Shi D, Seidler P, Rodriguez J, Reyes FE, Sawaya MR, Cascio D, Weiss SC, Kim SK, Hinck CS, Hinck AP, Calero G, Eisenberg D, Gonen T Nat Methods. 2017 Feb 13;14(4):399-402. doi: 10.1038/nmeth.4178. PMID:28192420<ref>PMID:28192420</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5k7o" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Lysozyme]]
		+	[[Category: Cascio, D]]
		+	[[Category: Cruz, M J.de la]]
		+	[[Category: Eisenberg, D]]
		+	[[Category: Gonen, T]]
		+	[[Category: Hattne, J]]
		+	[[Category: Reyes, F E]]
		+	[[Category: Rodriguez, J]]
		+	[[Category: Sawaya, M R]]
		+	[[Category: Seidler, P]]
		+	[[Category: Shi, D]]
		+	[[Category: Hydrolase]]

OCA at 21:11, 23 June 2016

2016-06-23T21:11:25Z

←Older revision		Revision as of 21:11, 23 June 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5k7o is ON HOLD	+	The entry 5k7o is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5k7o" [edit=sysop:move=sysop]

2016-06-01T14:26:02Z

Protected "5k7o" [edit=sysop:move=sysop]

←Older revision

Revision as of 14:26, 1 June 2016

OCA: New page: '''Unreleased structure''' The entry 5k7o is ON HOLD Authors: Description: Category: Unreleased Structures

2016-06-01T14:26:00Z

New page: '''Unreleased structure''' The entry 5k7o is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5k7o is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]