5kc8 - Revision history

OCA at 10:44, 27 September 2023

2023-09-27T10:44:48Z

←Older revision		Revision as of 10:44, 27 September 2023
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	<StructureSection load='5kc8' size='340' side='right'caption='[[5kc8]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='5kc8' size='340' side='right'caption='[[5kc8]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kc8]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KC8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5KC8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kc8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KC8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KC8 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>~~, ~~<scene name='pdbligand=EDO:~~1~~,2-ETHANEDIOL'>EDO</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.751Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~GRID2, GLURD2 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=9606 HUMAN])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5kc8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kc8 OCA], [~~http~~://pdbe.org/5kc8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5kc8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5kc8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5kc8 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kc8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kc8 OCA], [https://pdbe.org/5kc8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kc8 RCSB], [https://www.ebi.ac.uk/pdbsum/5kc8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kc8 ProSAT]</span></td></tr>
	</table>		</table>
	== Disease ==		== Disease ==
-	[~~[http~~://www.uniprot.org/uniprot/GRID2_HUMAN GRID2_HUMAN]] Autosomal recessive congenital cerebellar ataxia due to GRID2 deficiency. The disease is caused by mutations affecting the gene represented in this entry.	+	[https://www.uniprot.org/uniprot/GRID2_HUMAN GRID2_HUMAN] Autosomal recessive congenital cerebellar ataxia due to GRID2 deficiency. The disease is caused by mutations affecting the gene represented in this entry.
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/GRID2_HUMAN GRID2_HUMAN]] Receptor for glutamate. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. The postsynaptic actions of Glu are mediated by a variety of receptors that are named according to their selective agonists.	+	[https://www.uniprot.org/uniprot/GRID2_HUMAN GRID2_HUMAN] Receptor for glutamate. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. The postsynaptic actions of Glu are mediated by a variety of receptors that are named according to their selective agonists.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Aricescu~~, A R~~]]	+	[[Category: Aricescu AR]]
-	[[Category: Clay~~, J E~~]]	+	[[Category: Clay JE]]
-	[[Category: Elegheert, J]]	+	[[Category: Elegheert J]]
-	[[Category: Siebold, C]]	+	[[Category: Siebold C]]
-	~~[[Category: Neurotransmission]]~~	+
-	~~[[Category: Signaling protein~~]]	+

OCA at 09:33, 1 July 2020

2020-07-01T09:33:39Z

←Older revision		Revision as of 09:33, 1 July 2020
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	==Crystal structure of the amino-terminal domain (ATD) of iGluR Delta-2 (GluD2)==		==Crystal structure of the amino-terminal domain (ATD) of iGluR Delta-2 (GluD2)==
-	<StructureSection load='5kc8' size='340' side='right' caption='[[5kc8]], [[Resolution\|resolution]] 1.75Å' scene=''>	+	<StructureSection load='5kc8' size='340' side='right'caption='[[5kc8]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kc8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KC8 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5KC8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kc8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KC8 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5KC8 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5kc8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kc8 OCA], [http://pdbe.org/5kc8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kc8 RCSB], [http://www.ebi.ac.uk/pdbsum/5kc8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kc8 ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">GRID2, GLURD2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5kc8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kc8 OCA], [http://pdbe.org/5kc8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kc8 RCSB], [http://www.ebi.ac.uk/pdbsum/5kc8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kc8 ProSAT]</span></td></tr>
	</table>		</table>
	== Disease ==		== Disease ==
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	</div>		</div>
	<div class="pdbe-citations 5kc8" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5kc8" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Glutamate receptor 3D structures\|Glutamate receptor 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Aricescu, A R]]		[[Category: Aricescu, A R]]
	[[Category: Clay, J E]]		[[Category: Clay, J E]]

OCA at 20:45, 3 August 2016

2016-08-03T20:45:35Z

←Older revision		Revision as of 20:45, 3 August 2016
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-	==~~Structural Basis for Integration~~ of ~~GluD Receptors within Synaptic Organizer Complexes~~==	+	==Crystal structure of the amino-terminal domain (ATD) of iGluR Delta-2 (GluD2)==
	<StructureSection load='5kc8' size='340' side='right' caption='[[5kc8]], [[Resolution\|resolution]] 1.75Å' scene=''>		<StructureSection load='5kc8' size='340' side='right' caption='[[5kc8]], [[Resolution\|resolution]] 1.75Å' scene=''>
	== Structural highlights ==		== Structural highlights ==

OCA at 15:47, 27 July 2016

2016-07-27T15:47:07Z

←Older revision		Revision as of 15:47, 27 July 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5kc8 is ~~ON HOLD until Paper~~ Publication	+	==Structural Basis for Integration of GluD Receptors within Synaptic Organizer Complexes==
		+	<StructureSection load='5kc8' size='340' side='right' caption='[[5kc8]], [[Resolution\|resolution]] 1.75Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5kc8]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KC8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KC8 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kc8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kc8 OCA], [http://pdbe.org/5kc8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kc8 RCSB], [http://www.ebi.ac.uk/pdbsum/5kc8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kc8 ProSAT]</span></td></tr>
		+	</table>
		+	== Disease ==
		+	[[http://www.uniprot.org/uniprot/GRID2_HUMAN GRID2_HUMAN]] Autosomal recessive congenital cerebellar ataxia due to GRID2 deficiency. The disease is caused by mutations affecting the gene represented in this entry.
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GRID2_HUMAN GRID2_HUMAN]] Receptor for glutamate. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. The postsynaptic actions of Glu are mediated by a variety of receptors that are named according to their selective agonists.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Ionotropic glutamate receptor (iGluR) family members are integrated into supramolecular complexes that modulate their location and function at excitatory synapses. However, a lack of structural information beyond isolated receptors or fragments thereof currently limits the mechanistic understanding of physiological iGluR signaling. Here, we report structural and functional analyses of the prototypical molecular bridge linking postsynaptic iGluR delta2 (GluD2) and presynaptic beta-neurexin 1 (beta-NRX1) via Cbln1, a C1q-like synaptic organizer. We show how Cbln1 hexamers "anchor" GluD2 amino-terminal domain dimers to monomeric beta-NRX1. This arrangement promotes synaptogenesis and is essential for D: -serine-dependent GluD2 signaling in vivo, which underlies long-term depression of cerebellar parallel fiber-Purkinje cell (PF-PC) synapses and motor coordination in developing mice. These results lead to a model where protein and small-molecule ligands synergistically control synaptic iGluR function.

-	~~Authors~~:	+	Structural basis for integration of GluD receptors within synaptic organizer complexes.,Elegheert J, Kakegawa W, Clay JE, Shanks NF, Behiels E, Matsuda K, Kohda K, Miura E, Rossmann M, Mitakidis N, Motohashi J, Chang VT, Siebold C, Greger IH, Nakagawa T, Yuzaki M, Aricescu AR Science. 2016 Jul 15;353(6296):295-9. doi: 10.1126/science.aae0104. PMID:27418511<ref>PMID:27418511</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5kc8" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Aricescu, A R]]
		+	[[Category: Clay, J E]]
		+	[[Category: Elegheert, J]]
		+	[[Category: Siebold, C]]
		+	[[Category: Neurotransmission]]
		+	[[Category: Signaling protein]]

OCA at 21:22, 23 June 2016

2016-06-23T21:22:42Z

←Older revision		Revision as of 21:22, 23 June 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5kc8 is ON HOLD	+	The entry 5kc8 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "5kc8" [edit=sysop:move=sysop]

2016-06-20T13:42:40Z

Protected "5kc8" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:42, 20 June 2016

OCA: New page: '''Unreleased structure''' The entry 5kc8 is ON HOLD Authors: Description: Category: Unreleased Structures

2016-06-20T13:42:38Z

New page: '''Unreleased structure''' The entry 5kc8 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5kc8 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]