5kvv - Revision history

OCA at 10:58, 27 September 2023

2023-09-27T10:58:01Z

←Older revision		Revision as of 10:58, 27 September 2023
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	<StructureSection load='5kvv' size='340' side='right'caption='[[5kvv]], [[Resolution\|resolution]] 2.01Å' scene=''>		<StructureSection load='5kvv' size='340' side='right'caption='[[5kvv]], [[Resolution\|resolution]] 2.01Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kvv]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KVV OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5KVV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kvv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KVV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5KVV FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.01Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5kvu\|5kvu]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5kvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kvv OCA], [https://pdbe.org/5kvv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5kvv RCSB], [https://www.ebi.ac.uk/pdbsum/5kvv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5kvv ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5kvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kvv OCA], [~~http~~://pdbe.org/5kvv PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5kvv RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5kvv PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5kvv ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/MDH_MYCTU MDH_MYCTU]] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_01517]	+	[https://www.uniprot.org/uniprot/MDH_MYCTU MDH_MYCTU] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_01517]

	==See Also==		==See Also==
Line 17:		Line 16:
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Malate dehydrogenase~~]]	+	[[Category: Mycobacterium tuberculosis H37Rv]]
-	[[Category: Cheng~~, Y S~~]]	+	[[Category: Cheng YS]]
-	[[Category: Sacchettini~~, J C]]~~	+	[[Category: Sacchettini JC]]
-	~~[[Category: Structural genomic]]~~	+
-	~~[[Category: Krebs cycle]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Tbsgc~~]]	+

OCA at 06:35, 5 August 2020

2020-08-05T06:35:31Z

←Older revision		Revision as of 06:35, 5 August 2020
Line 1:		Line 1:

	==Structure of Malate Dehydrogenase in complex with NADH from Mycobacterium tuberculosis==		==Structure of Malate Dehydrogenase in complex with NADH from Mycobacterium tuberculosis==
-	<StructureSection load='5kvv' size='340' side='right' caption='[[5kvv]], [[Resolution\|resolution]] 2.01Å' scene=''>	+	<StructureSection load='5kvv' size='340' side='right'caption='[[5kvv]], [[Resolution\|resolution]] 2.01Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5kvv]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KVV OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5KVV FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5kvv]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KVV OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5KVV FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5kvu\|5kvu]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5kvu\|5kvu]]</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5kvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kvv OCA], [http://pdbe.org/5kvv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kvv RCSB], [http://www.ebi.ac.uk/pdbsum/5kvv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kvv ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5kvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kvv OCA], [http://pdbe.org/5kvv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kvv RCSB], [http://www.ebi.ac.uk/pdbsum/5kvv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kvv ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 13:		Line 13:

	==See Also==		==See Also==
-	*[[Malate ~~dehydrogenase~~\|Malate ~~dehydrogenase~~]]	+	*[[Malate Dehydrogenase 3D structures\|Malate Dehydrogenase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Malate dehydrogenase]]		[[Category: Malate dehydrogenase]]
	[[Category: Cheng, Y S]]		[[Category: Cheng, Y S]]

OCA at 12:27, 7 October 2017

2017-10-07T12:27:29Z

←Older revision		Revision as of 12:27, 7 October 2017
Line 11:		Line 11:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/MDH_MYCTU MDH_MYCTU]] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_01517]		[[http://www.uniprot.org/uniprot/MDH_MYCTU MDH_MYCTU]] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_01517]
		+
		+	==See Also==
		+	*[[Malate dehydrogenase\|Malate dehydrogenase]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>

OCA at 15:35, 14 September 2016

2016-09-14T15:35:32Z

←Older revision		Revision as of 15:35, 14 September 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5kvv is ~~ON HOLD~~	+	==Structure of Malate Dehydrogenase in complex with NADH from Mycobacterium tuberculosis==
-		+	<StructureSection load='5kvv' size='340' side='right' caption='[[5kvv]], [[Resolution\|resolution]] 2.01Å' scene=''>
-	~~Authors~~: ~~Cheng~~, Y.S., ~~Sacchettini~~, J.C., ~~TB Structural Genomics Consortium (TBSGC)~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5kvv]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5KVV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5KVV FirstGlance]. <br>
-	~~Description~~: ~~Structure~~ of ~~Malate Dehydrogenase in complex with NADH from Mycobacterium tuberculosis~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAI:1,4-DIHYDRONICOTINAMIDE+ADENINE+DINUCLEOTIDE'>NAI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5kvu\|5kvu]]</td></tr>
-	[[Category: Cheng, Y.S]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Malate_dehydrogenase Malate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.37 1.1.1.37] </span></td></tr>
-	[[Category: Sacchettini, J.C]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5kvv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5kvv OCA], [http://pdbe.org/5kvv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5kvv RCSB], [http://www.ebi.ac.uk/pdbsum/5kvv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5kvv ProSAT]</span></td></tr>
-	[[Category: Tb Structural ~~Genomics Consortium (~~Tbsgc)]]	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/MDH_MYCTU MDH_MYCTU]] Catalyzes the reversible oxidation of malate to oxaloacetate.[HAMAP-Rule:MF_01517]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Malate dehydrogenase]]
		+	[[Category: Cheng, Y S]]
		+	[[Category: Sacchettini, J C]]
		+	[[Category: Structural genomic]]
		+	[[Category: Krebs cycle]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Tbsgc]]

OCA: Protected "5kvv" [edit=sysop:move=sysop]

2016-07-27T13:25:33Z

Protected "5kvv" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:25, 27 July 2016

OCA: New page: '''Unreleased structure''' The entry 5kvv is ON HOLD Authors: Cheng, Y.S., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC) Description: Structure of Malate Dehydrogenase i...

2016-07-27T13:25:32Z

New page: '''Unreleased structure''' The entry 5kvv is ON HOLD Authors: Cheng, Y.S., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC) Description: Structure of Malate Dehydrogenase i...

New page

'''Unreleased structure'''

The entry 5kvv is ON HOLD

Authors: Cheng, Y.S., Sacchettini, J.C., TB Structural Genomics Consortium (TBSGC)

Description: Structure of Malate Dehydrogenase in complex with NADH from Mycobacterium tuberculosis
[[Category: Unreleased Structures]]
[[Category: Cheng, Y.S]]
[[Category: Sacchettini, J.C]]
[[Category: Tb Structural Genomics Consortium (Tbsgc)]]