5lin - Revision history

OCA at 18:27, 18 October 2023

2023-10-18T18:27:55Z

←Older revision		Revision as of 18:27, 18 October 2023
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	<StructureSection load='5lin' size='340' side='right'caption='[[5lin]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='5lin' size='340' side='right'caption='[[5lin]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lin]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LIN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5LIN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lin]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LIN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LIN FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.496Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5lin FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lin OCA], [~~http~~://pdbe.org/5lin PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5lin RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5lin PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5lin ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lin FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lin OCA], [https://pdbe.org/5lin PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lin RCSB], [https://www.ebi.ac.uk/pdbsum/5lin PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lin ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>	+	[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Lysozyme]]~~	+	[[Category: Casanas A]]
-	[[Category: Casanas, A]]	+	[[Category: Finke A]]
-	[[Category: Finke, A]]	+	[[Category: Wang M]]
-	[[Category: Wang, M]]	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 10:38, 12 August 2020

2020-08-12T10:38:15Z

←Older revision		Revision as of 10:38, 12 August 2020
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	==Lysozyme, collected at rotation 1 degree per second==		==Lysozyme, collected at rotation 1 degree per second==
-	<StructureSection load='5lin' size='340' side='right' caption='[[5lin]], [[Resolution\|resolution]] 1.50Å' scene=''>	+	<StructureSection load='5lin' size='340' side='right'caption='[[5lin]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lin]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LIN OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5LIN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lin]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LIN OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LIN FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5lin FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lin OCA], [http://pdbe.org/5lin PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lin RCSB], [http://www.ebi.ac.uk/pdbsum/5lin PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lin ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5lin FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lin OCA], [http://pdbe.org/5lin PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lin RCSB], [http://www.ebi.ac.uk/pdbsum/5lin PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lin ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 5lin" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5lin" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Lysozyme 3D structures\|Lysozyme 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 24:		Line 27:
	</StructureSection>		</StructureSection>
	[[Category: Gallus gallus]]		[[Category: Gallus gallus]]
		+	[[Category: Large Structures]]
	[[Category: Lysozyme]]		[[Category: Lysozyme]]
	[[Category: Casanas, A]]		[[Category: Casanas, A]]

OCA at 09:12, 3 October 2016

2016-10-03T09:12:08Z

←Older revision		Revision as of 09:12, 3 October 2016
Line 10:		Line 10:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>		[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The development of single-photon-counting detectors, such as the PILATUS, has been a major recent breakthrough in macromolecular crystallography, enabling noise-free detection and novel data-acquisition modes. The new EIGER detector features a pixel size of 75 x 75 microm, frame rates of up to 3000 Hz and a dead time as low as 3.8 micros. An EIGER 1M and EIGER 16M were tested on Swiss Light Source beamlines X10SA and X06SA for their application in macromolecular crystallography. The combination of fast frame rates and a very short dead time allows high-quality data acquisition in a shorter time. The ultrafine varphi-slicing data-collection method is introduced and validated and its application in finding the optimal rotation angle, a suitable rotation speed and a sufficient X-ray dose are presented. An improvement of the data quality up to slicing at one tenth of the mosaicity has been observed, which is much finer than expected based on previous findings. The influence of key data-collection parameters on data quality is discussed.
		+
		+	EIGER detector: application in macromolecular crystallography.,Casanas A, Warshamanage R, Finke AD, Panepucci E, Olieric V, Noll A, Tampe R, Brandstetter S, Forster A, Mueller M, Schulze-Briese C, Bunk O, Wang M Acta Crystallogr D Struct Biol. 2016 Sep;72(Pt 9):1036-48. doi:, 10.1107/S2059798316012304. Epub 2016 Aug 31. PMID:27599736<ref>PMID:27599736</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5lin" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 04:22, 4 August 2016

2016-08-04T04:22:24Z

←Older revision		Revision as of 04:22, 4 August 2016
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5lin is ~~ON HOLD~~	+	==Lysozyme, collected at rotation 1 degree per second==
-		+	<StructureSection load='5lin' size='340' side='right' caption='[[5lin]], [[Resolution\|resolution]] 1.50Å' scene=''>
-	~~Authors~~: ~~Casanas~~, A., ~~Finke~~, A., ~~Wang~~, M.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5lin]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LIN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LIN FirstGlance]. <br>
-	~~Description~~: Lysozyme, ~~collected at rotation 1 degree per second~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lin FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lin OCA], [http://pdbe.org/5lin PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lin RCSB], [http://www.ebi.ac.uk/pdbsum/5lin PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lin ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Gallus gallus]]
		+	[[Category: Lysozyme]]
		+	[[Category: Casanas, A]]
		+	[[Category: Finke, A]]
	[[Category: Wang, M]]		[[Category: Wang, M]]
-	[[Category: ~~Finke, A]]~~	+	[[Category: Hydrolase]]
-	~~[[Category: Casanas, A~~]]	+

OCA at 13:59, 27 July 2016

2016-07-27T13:59:40Z

←Older revision		Revision as of 13:59, 27 July 2016
Line 3:		Line 3:
	The entry 5lin is ON HOLD		The entry 5lin is ON HOLD

-	Authors: Casanas, ~~Arnau~~, Finke, ~~Aaron~~, Wang, ~~Meitian~~	+	Authors: Casanas, A., Finke, A., Wang, M.

	Description: Lysozyme, collected at rotation 1 degree per second		Description: Lysozyme, collected at rotation 1 degree per second
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: ~~Casanas, Arnau~~, Finke, ~~Aaron, Wang~~, ~~Meitian~~]]	+	[[Category: Wang, M]]
		+	[[Category: Finke, A]]
		+	[[Category: Casanas, A]]

OCA: Protected "5lin" [edit=sysop:move=sysop]

2016-07-26T13:36:34Z

Protected "5lin" [edit=sysop:move=sysop]

←Older revision

Revision as of 13:36, 26 July 2016

OCA: New page: '''Unreleased structure''' The entry 5lin is ON HOLD Authors: Casanas, Arnau, Finke, Aaron, Wang, Meitian Description: Lysozyme, collected at rotation 1 degree per second [[Category: U...

2016-07-26T13:36:32Z

New page: '''Unreleased structure''' The entry 5lin is ON HOLD Authors: Casanas, Arnau, Finke, Aaron, Wang, Meitian Description: Lysozyme, collected at rotation 1 degree per second [[Category: U...

New page

'''Unreleased structure'''

The entry 5lin is ON HOLD

Authors: Casanas, Arnau, Finke, Aaron, Wang, Meitian

Description: Lysozyme, collected at rotation 1 degree per second
[[Category: Unreleased Structures]]
[[Category: Casanas, Arnau, Finke, Aaron, Wang, Meitian]]