5lqp - Revision history

OCA at 18:41, 18 October 2023

2023-10-18T18:41:41Z

←Older revision		Revision as of 18:41, 18 October 2023
Line 3:		Line 3:
	<SX load='5lqp' size='340' side='right' viewer='molstar' caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>		<SX load='5lqp' size='340' side='right' viewer='molstar' caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lqp]] is a 180 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Acinetobacter_phage_ap205~~ Acinetobacter phage ~~ap205~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQP OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5LQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lqp]] is a 180 chain structure with sequence from [https://en.wikipedia.org/wiki/Acinetobacter_phage_AP205 Acinetobacter phage AP205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LQP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5lqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lqp OCA], [~~http~~://pdbe.org/5lqp PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5lqp RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5lqp PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5lqp ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 6Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lqp OCA], [https://pdbe.org/5lqp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lqp RCSB], [https://www.ebi.ac.uk/pdbsum/5lqp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lqp ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q9AZ42_9VIRU Q9AZ42_9VIRU]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 19:		Line 22:
	__TOC__		__TOC__
	</SX>		</SX>
-	[[Category: Acinetobacter phage ~~ap205~~]]	+	[[Category: Acinetobacter phage AP205]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Diebolder~~, C A~~]]	+	[[Category: Diebolder CA]]
-	[[Category: Koning~~, R I~~]]	+	[[Category: Koning RI]]
-	[[Category: Rumnieks, J]]	+	[[Category: Rumnieks J]]
-	[[Category: Tars, K]]	+	[[Category: Tars K]]
-	~~[[Category: Coat protein]]~~	+
-	~~[[Category: Leviviridae]]~~	+
-	~~[[Category: Rna bacteriophage]]~~	+
-	~~[[Category: Virus like particle]]~~	+
-	~~[[Category: Virus-like particle~~]]	+

OCA at 20:45, 10 April 2020

2020-04-10T20:45:47Z

←Older revision		Revision as of 20:45, 10 April 2020
Line 3:		Line 3:
	<SX load='5lqp' size='340' side='right' viewer='molstar' caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>		<SX load='5lqp' size='340' side='right' viewer='molstar' caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lqp]] is a 180 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_phage_ap205 Acinetobacter phage ap205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQP OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5LQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lqp]] is a 180 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_phage_ap205 Acinetobacter phage ap205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQP OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5LQP FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5lqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lqp OCA], [http://pdbe.org/5lqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lqp RCSB], [http://www.ebi.ac.uk/pdbsum/5lqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lqp ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5lqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lqp OCA], [http://pdbe.org/5lqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lqp RCSB], [http://www.ebi.ac.uk/pdbsum/5lqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lqp ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">

OCA at 18:59, 6 March 2020

2020-03-06T18:59:53Z

←Older revision		Revision as of 18:59, 6 March 2020
Line 1:		Line 1:

	==Cryo-EM reconstruction of bacteriophage AP205 virus-like particles.==		==Cryo-EM reconstruction of bacteriophage AP205 virus-like particles.==
-	<~~StructureSection~~ load='5lqp' size='340' side='right'caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>	+	<SX load='5lqp' size='340' side='right' viewer='molstar' caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5lqp]] is a 180 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_phage_ap205 Acinetobacter phage ap205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LQP FirstGlance]. <br>		<table><tr><td colspan='2'>[[5lqp]] is a 180 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_phage_ap205 Acinetobacter phage ap205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LQP FirstGlance]. <br>
Line 18:		Line 18:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Acinetobacter phage ap205]]		[[Category: Acinetobacter phage ap205]]
	[[Category: Large Structures]]		[[Category: Large Structures]]

OCA at 07:41, 23 October 2019

2019-10-23T07:41:32Z

←Older revision		Revision as of 07:41, 23 October 2019
Line 1:		Line 1:
-	~~{{Large structure}}~~	+
	==Cryo-EM reconstruction of bacteriophage AP205 virus-like particles.==		==Cryo-EM reconstruction of bacteriophage AP205 virus-like particles.==
-	<StructureSection load='5lqp' size='340' side='right' caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>	+	<StructureSection load='5lqp' size='340' side='right'caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5lqp]] is a 180 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_phage_ap205 Acinetobacter phage ap205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LQP FirstGlance]. <br>		<table><tr><td colspan='2'>[[5lqp]] is a 180 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_phage_ap205 Acinetobacter phage ap205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LQP FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lqp OCA], [http://pdbe.org/5lqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lqp RCSB], [http://www.ebi.ac.uk/pdbsum/5lqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lqp ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lqp OCA], [http://pdbe.org/5lqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lqp RCSB], [http://www.ebi.ac.uk/pdbsum/5lqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lqp ProSAT]</span></td></tr>
	</table>		</table>
-	{{Large structure}}
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 21:		Line 20:
	</StructureSection>		</StructureSection>
	[[Category: Acinetobacter phage ap205]]		[[Category: Acinetobacter phage ap205]]
		+	[[Category: Large Structures]]
	[[Category: Diebolder, C A]]		[[Category: Diebolder, C A]]
	[[Category: Koning, R I]]		[[Category: Koning, R I]]

OCA at 06:57, 28 March 2018

2018-03-28T06:57:21Z

←Older revision		Revision as of 06:57, 28 March 2018
Line 1:		Line 1:
	{{Large structure}}		{{Large structure}}
-	==Cryo-EM reconstruction of bacteriophage AP205 virus-like particles==	+	==Cryo-EM reconstruction of bacteriophage AP205 virus-like particles.==
	<StructureSection load='5lqp' size='340' side='right' caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>		<StructureSection load='5lqp' size='340' side='right' caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==

OCA at 04:23, 16 November 2017

2017-11-16T04:23:45Z

←Older revision		Revision as of 04:23, 16 November 2017
Line 3:		Line 3:
	<StructureSection load='5lqp' size='340' side='right' caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>		<StructureSection load='5lqp' size='340' side='right' caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5lqp]] is a 180 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LQP FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5lqp]] is a 180 chain structure with sequence from [http://en.wikipedia.org/wiki/Acinetobacter_phage_ap205 Acinetobacter phage ap205]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LQP FirstGlance]. <br>
	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lqp OCA], [http://pdbe.org/5lqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lqp RCSB], [http://www.ebi.ac.uk/pdbsum/5lqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lqp ProSAT]</span></td></tr>		</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lqp OCA], [http://pdbe.org/5lqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lqp RCSB], [http://www.ebi.ac.uk/pdbsum/5lqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lqp ProSAT]</span></td></tr>
	</table>		</table>
Line 20:		Line 20:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Acinetobacter phage ap205]]
	[[Category: Diebolder, C A]]		[[Category: Diebolder, C A]]
	[[Category: Koning, R I]]		[[Category: Koning, R I]]

OCA at 18:58, 15 December 2016

2016-12-15T18:58:41Z

←Older revision		Revision as of 18:58, 15 December 2016
Line 1:		Line 1:
-	'''~~Unreleased~~ structure'''	+	{{Large structure}}
		+	==Cryo-EM reconstruction of bacteriophage AP205 virus-like particles==
		+	<StructureSection load='5lqp' size='340' side='right' caption='[[5lqp]], [[Resolution\|resolution]] 6.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5lqp]] is a 180 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LQP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LQP FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lqp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lqp OCA], [http://pdbe.org/5lqp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lqp RCSB], [http://www.ebi.ac.uk/pdbsum/5lqp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lqp ProSAT]</span></td></tr>
		+	</table>
		+	{{Large structure}}
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	AP205 is a single-stranded RNA bacteriophage that has a coat protein sequence not similar to any other known single-stranded RNA phage. Here, we report an atomic-resolution model of the AP205 virus-like particle based on a crystal structure of an unassembled coat protein dimer and a cryo-electron microscopy reconstruction of the assembled particle, together with secondary structure information from site-specific solid-state NMR data. The AP205 coat protein dimer adopts the conserved Leviviridae coat protein fold except for the N-terminal region, which forms a beta-hairpin in the other known single-stranded RNA phages. AP205 has a similar structure at the same location formed by N- and C-terminal beta-strands, making it a circular permutant compared to the other coat proteins. The permutation moves the coat protein termini to the most surface-exposed part of the assembled particle, which explains its increased tolerance to long N- and C-terminal fusions.

-	~~The entry 5lqp is ON HOLD~~	+	Structure of AP205 Coat Protein Reveals Circular Permutation in ssRNA Bacteriophages.,Shishovs M, Rumnieks J, Diebolder C, Jaudzems K, Andreas LB, Stanek J, Kazaks A, Kotelovica S, Akopjana I, Pintacuda G, Koning RI, Tars K J Mol Biol. 2016 Aug 31. pii: S0022-2836(16)30345-X. doi:, 10.1016/j.jmb.2016.08.025. PMID:27591890<ref>PMID:27591890</ref>

-	~~Authors: Diebolder~~, C.A.~~, Rumnieks, J., Tars, K., Koning, R.I~~.	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-		+	</div>
-	~~Description: Cryo~~-~~EM reconstruction of bacteriophage AP205 virus~~-~~like particles~~	+	<div class="pdbe-citations 5lqp" style="background-color:#fffaf0;"></div>
-	[[Category: ~~Unreleased Structures~~]]	+	== References ==
-	[[Category: Koning, R.I]]	+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Diebolder, C A]]
		+	[[Category: Koning, R I]]
	[[Category: Rumnieks, J]]		[[Category: Rumnieks, J]]
-	[[Category: Diebolder, C.A]]
	[[Category: Tars, K]]		[[Category: Tars, K]]
		+	[[Category: Coat protein]]
		+	[[Category: Leviviridae]]
		+	[[Category: Rna bacteriophage]]
		+	[[Category: Virus like particle]]
		+	[[Category: Virus-like particle]]

OCA at 16:03, 9 December 2016

2016-12-09T16:03:05Z

←Older revision		Revision as of 16:03, 9 December 2016
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5lqp is ON HOLD ~~until sometime in the future~~	+	The entry 5lqp is ON HOLD

	Authors: Diebolder, C.A., Rumnieks, J., Tars, K., Koning, R.I.		Authors: Diebolder, C.A., Rumnieks, J., Tars, K., Koning, R.I.

OCA: Protected "5lqp" [edit=sysop:move=sysop]

2016-09-09T15:12:11Z

Protected "5lqp" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:12, 9 September 2016

OCA: New page: '''Unreleased structure''' The entry 5lqp is ON HOLD until sometime in the future Authors: Diebolder, C.A., Rumnieks, J., Tars, K., Koning, R.I. Description: Cryo-EM reconstruction of ...

2016-09-09T15:12:10Z

New page: '''Unreleased structure''' The entry 5lqp is ON HOLD until sometime in the future Authors: Diebolder, C.A., Rumnieks, J., Tars, K., Koning, R.I. Description: Cryo-EM reconstruction of ...

New page

'''Unreleased structure'''

The entry 5lqp is ON HOLD until sometime in the future

Authors: Diebolder, C.A., Rumnieks, J., Tars, K., Koning, R.I.

Description: Cryo-EM reconstruction of bacteriophage AP205 virus-like particles
[[Category: Unreleased Structures]]
[[Category: Koning, R.I]]
[[Category: Rumnieks, J]]
[[Category: Diebolder, C.A]]
[[Category: Tars, K]]