5m4b - Revision history

OCA at 18:25, 1 November 2023

2023-11-01T18:25:24Z

←Older revision		Revision as of 18:25, 1 November 2023
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	==Alpha-amino epsilon-caprolactam racemase D210A mutant in complex with PLP and geminal diamine intermediate==		==Alpha-amino epsilon-caprolactam racemase D210A mutant in complex with PLP and geminal diamine intermediate==
-	<StructureSection load='5m4b' size='340' side='right' caption='[[5m4b]], [[Resolution\|resolution]] 1.50Å' scene=''>	+	<StructureSection load='5m4b' size='340' side='right'caption='[[5m4b]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5m4b]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Rhizobacter Rhizobacter]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M4B OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5M4B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5m4b]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhizobacter Rhizobacter]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M4B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5M4B FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=7F7:[6-METHYL-5-OXIDANYL-4-[(~{E})-[(3~{R})-2-OXIDANYLIDENEAZEPAN-3-YL]IMINOMETHYL]PYRIDIN-3-YL]METHYL+DIHYDROGEN+PHOSPHATE'>7F7</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.5Å</td></tr>
-	~~<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5m46\|5m46]]</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=7F7:[6-METHYL-5-OXIDANYL-4-[(~{E})-[(3~{R})-2-OXIDANYLIDENEAZEPAN-3-YL]IMINOMETHYL]PYRIDIN-3-YL]METHYL+DIHYDROGEN+PHOSPHATE'>7F7</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RHSP_08934 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=212743 Rhizobacter])</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5m4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m4b OCA], [https://pdbe.org/5m4b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5m4b RCSB], [https://www.ebi.ac.uk/pdbsum/5m4b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5m4b ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-aminohexano-6-lactam_racemase 2-aminohexano-6-lactam racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.15 5.1.1.15] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5m4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m4b OCA], [~~http~~://pdbe.org/5m4b PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5m4b RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5m4b PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5m4b ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/N6UXY4_9HYPH N6UXY4_9HYPH]
		+
		+	==See Also==
		+	*[[Aminotransferase 3D structures\|Aminotransferase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~2-aminohexano-6-lactam racemase~~]]	+	[[Category: Large Structures]]
	[[Category: Rhizobacter]]		[[Category: Rhizobacter]]
-	[[Category: Frese, A]]	+	[[Category: Frese A]]
-	[[Category: Grogan, G]]	+	[[Category: Grogan G]]
-	[[Category: Sutton~~, P W~~]]	+	[[Category: Sutton PW]]
-	[[Category: Turkenburg~~, J P]]~~	+	[[Category: Turkenburg JP]]
-	~~[[Category: Isomerase]]~~	+
-	~~[[Category: Plp]]~~	+
-	~~[[Category: Racemase~~]]	+

OCA at 18:38, 15 November 2017

2017-11-15T18:38:24Z

←Older revision		Revision as of 18:38, 15 November 2017
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	<StructureSection load='5m4b' size='340' side='right' caption='[[5m4b]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='5m4b' size='340' side='right' caption='[[5m4b]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5m4b]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M4B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M4B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5m4b]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhizobacter Rhizobacter]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M4B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M4B FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=7F7:[6-METHYL-5-OXIDANYL-4-[(~{E})-[(3~{R})-2-OXIDANYLIDENEAZEPAN-3-YL]IMINOMETHYL]PYRIDIN-3-YL]METHYL+DIHYDROGEN+PHOSPHATE'>7F7</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=7F7:[6-METHYL-5-OXIDANYL-4-[(~{E})-[(3~{R})-2-OXIDANYLIDENEAZEPAN-3-YL]IMINOMETHYL]PYRIDIN-3-YL]METHYL+DIHYDROGEN+PHOSPHATE'>7F7</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5m46\|5m46]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">RHSP_08934 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=212743 Rhizobacter])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-aminohexano-6-lactam_racemase 2-aminohexano-6-lactam racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.15 5.1.1.15] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-aminohexano-6-lactam_racemase 2-aminohexano-6-lactam racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.15 5.1.1.15] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m4b OCA], [http://pdbe.org/5m4b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m4b RCSB], [http://www.ebi.ac.uk/pdbsum/5m4b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m4b ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m4b OCA], [http://pdbe.org/5m4b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m4b RCSB], [http://www.ebi.ac.uk/pdbsum/5m4b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m4b ProSAT]</span></td></tr>
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	</StructureSection>		</StructureSection>
	[[Category: 2-aminohexano-6-lactam racemase]]		[[Category: 2-aminohexano-6-lactam racemase]]
		+	[[Category: Rhizobacter]]
	[[Category: Frese, A]]		[[Category: Frese, A]]
	[[Category: Grogan, G]]		[[Category: Grogan, G]]

OCA at 13:00, 19 April 2017

2017-04-19T13:00:18Z

←Older revision		Revision as of 13:00, 19 April 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5m4b is ~~ON HOLD until Paper Publication~~	+	==Alpha-amino epsilon-caprolactam racemase D210A mutant in complex with PLP and geminal diamine intermediate==
-		+	<StructureSection load='5m4b' size='340' side='right' caption='[[5m4b]], [[Resolution\|resolution]] 1.50Å' scene=''>
-	~~Authors~~: ~~Frese~~, A., ~~Sutton, P~~.W., ~~Turkenburg~~, J.P., ~~Grogan~~, G.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5m4b]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5M4B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5M4B FirstGlance]. <br>
-	~~Description: Alpha-amino epsilon-caprolactam racemase D210A mutant in complex with PLP and geminal diamine intermediate~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=7F7:[6-METHYL-5-OXIDANYL-4-[(~{E})-[(3~{R})-2-OXIDANYLIDENEAZEPAN-3-YL]IMINOMETHYL]PYRIDIN-3-YL]METHYL+DIHYDROGEN+PHOSPHATE'>7F7</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/2-aminohexano-6-lactam_racemase 2-aminohexano-6-lactam racemase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.1.15 5.1.1.15] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5m4b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5m4b OCA], [http://pdbe.org/5m4b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5m4b RCSB], [http://www.ebi.ac.uk/pdbsum/5m4b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5m4b ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: 2-aminohexano-6-lactam racemase]]
	[[Category: Frese, A]]		[[Category: Frese, A]]
	[[Category: Grogan, G]]		[[Category: Grogan, G]]
-	[[Category: ~~Turkenburg~~, J.P]]	+	[[Category: Sutton, P W]]
-	[[Category: ~~Sutton~~, P.W]]	+	[[Category: Turkenburg, J P]]
		+	[[Category: Isomerase]]
		+	[[Category: Plp]]
		+	[[Category: Racemase]]

OCA at 11:02, 9 March 2017

2017-03-09T11:02:45Z

←Older revision		Revision as of 11:02, 9 March 2017
Line 7:		Line 7:
	Description: Alpha-amino epsilon-caprolactam racemase D210A mutant in complex with PLP and geminal diamine intermediate		Description: Alpha-amino epsilon-caprolactam racemase D210A mutant in complex with PLP and geminal diamine intermediate
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Turkenburg, J.P]]
-	[[Category: Sutton, P.W]]
	[[Category: Frese, A]]		[[Category: Frese, A]]
	[[Category: Grogan, G]]		[[Category: Grogan, G]]
		+	[[Category: Turkenburg, J.P]]
		+	[[Category: Sutton, P.W]]

OCA: Protected "5m4b" [edit=sysop:move=sysop]

2016-10-26T16:23:35Z

Protected "5m4b" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:23, 26 October 2016

OCA: New page: '''Unreleased structure''' The entry 5m4b is ON HOLD until Paper Publication Authors: Frese, A., Sutton, P.W., Turkenburg, J.P., Grogan, G. Description: Alpha-amino epsilon-caprolactam...

2016-10-26T16:23:34Z

New page: '''Unreleased structure''' The entry 5m4b is ON HOLD until Paper Publication Authors: Frese, A., Sutton, P.W., Turkenburg, J.P., Grogan, G. Description: Alpha-amino epsilon-caprolactam...

New page

'''Unreleased structure'''

The entry 5m4b is ON HOLD until Paper Publication

Authors: Frese, A., Sutton, P.W., Turkenburg, J.P., Grogan, G.

Description: Alpha-amino epsilon-caprolactam racemase D210A mutant in complex with PLP and geminal diamine intermediate
[[Category: Unreleased Structures]]
[[Category: Turkenburg, J.P]]
[[Category: Sutton, P.W]]
[[Category: Frese, A]]
[[Category: Grogan, G]]