5ogs - Revision history

OCA at 16:49, 13 December 2023

2023-12-13T16:49:51Z

←Older revision		Revision as of 16:49, 13 December 2023
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	==Crystal structure of human AND-1 SepB domain==		==Crystal structure of human AND-1 SepB domain==
-	<StructureSection load='5ogs' size='340' side='right' caption='[[5ogs]], [[Resolution\|resolution]] 2.50Å' scene=''>	+	<StructureSection load='5ogs' size='340' side='right'caption='[[5ogs]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ogs]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OGS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5OGS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ogs]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OGS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OGS FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=MLI:MALONATE+ION'>MLI</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.503Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~WDHD1, AND1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=9606 HUMAN])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ogs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ogs OCA], [~~http~~://pdbe.org/5ogs PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5ogs RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5ogs PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5ogs ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ogs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ogs OCA], [https://pdbe.org/5ogs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ogs RCSB], [https://www.ebi.ac.uk/pdbsum/5ogs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ogs ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/WDHD1_HUMAN WDHD1_HUMAN]] Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication.<ref>PMID:19805216</ref>	+	[https://www.uniprot.org/uniprot/WDHD1_HUMAN WDHD1_HUMAN] Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication.<ref>PMID:19805216</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 23:		Line 23:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Homo sapiens]]
-	[[Category: ~~Pellegrini, L~~]]	+	[[Category: Large Structures]]
-	[[Category: ~~Simon, A C~~]]	+	[[Category: Pellegrini L]]
-	[[Category: ~~Dna replication/adaptor protein/beta propeller domain]]~~	+	[[Category: Simon AC]]
-	~~[[Category: Replication~~]]	+

OCA at 07:01, 31 January 2018

2018-01-31T07:01:45Z

←Older revision		Revision as of 07:01, 31 January 2018
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Human]]		[[Category: Human]]
-	[[Category: Pellegrini, L ~~Luca~~]]	+	[[Category: Pellegrini, L]]
	[[Category: Simon, A C]]		[[Category: Simon, A C]]
	[[Category: Dna replication/adaptor protein/beta propeller domain]]		[[Category: Dna replication/adaptor protein/beta propeller domain]]
	[[Category: Replication]]		[[Category: Replication]]

OCA at 07:45, 6 December 2017

2017-12-06T07:45:35Z

←Older revision		Revision as of 07:45, 6 December 2017
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	<StructureSection load='5ogs' size='340' side='right' caption='[[5ogs]], [[Resolution\|resolution]] 2.50Å' scene=''>		<StructureSection load='5ogs' size='340' side='right' caption='[[5ogs]], [[Resolution\|resolution]] 2.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5ogs]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OGS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OGS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5ogs]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OGS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OGS FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">WDHD1, AND1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ogs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ogs OCA], [http://pdbe.org/5ogs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ogs RCSB], [http://www.ebi.ac.uk/pdbsum/5ogs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ogs ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ogs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ogs OCA], [http://pdbe.org/5ogs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ogs RCSB], [http://www.ebi.ac.uk/pdbsum/5ogs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ogs ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/WDHD1_HUMAN WDHD1_HUMAN]] Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication.<ref>PMID:19805216</ref>		[[http://www.uniprot.org/uniprot/WDHD1_HUMAN WDHD1_HUMAN]] Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication.<ref>PMID:19805216</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	A dynamic multi-protein assembly known as the replisome is responsible for DNA synthesis in eukaryotic cells. In yeast, the hub protein Ctf4 bridges DNA helicase and DNA polymerase and recruits factors with roles in metabolic processes coupled to DNA replication. An important question in DNA replication is the extent to which the molecular architecture of the replisome is conserved between yeast and higher eukaryotes. Here, we describe the biochemical basis for the interaction of the human CTF4-orthologue AND-1 with DNA polymerase alpha (Pol alpha)/primase, the replicative polymerase that initiates DNA synthesis. AND-1 has maintained the trimeric structure of yeast Ctf4, driven by its conserved SepB domain. However, the primary interaction of AND-1 with Pol alpha/primase is mediated by its C-terminal HMG box, unique to mammalian AND-1, which binds the B subunit, at the same site targeted by the SV40 T-antigen for viral replication. In addition, we report a novel DNA-binding activity in AND-1, which might promote the correct positioning of Pol alpha/primase on the lagging-strand template at the replication fork. Our findings provide a biochemical basis for the specific interaction between two critical components of the human replisome, and indicate that important principles of replisome architecture have changed significantly in evolution.
		+
		+	The human CTF4-orthologue AND-1 interacts with DNA polymerase alpha/primase via its unique C-terminal HMG box.,Kilkenny ML, Simon AC, Mainwaring J, Wirthensohn D, Holzer S, Pellegrini L Open Biol. 2017 Nov;7(11). pii: rsob.170217. doi: 10.1098/rsob.170217. PMID:29167311<ref>PMID:29167311</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5ogs" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
	[[Category: Pellegrini, L Luca]]		[[Category: Pellegrini, L Luca]]
	[[Category: Simon, A C]]		[[Category: Simon, A C]]
	[[Category: Dna replication/adaptor protein/beta propeller domain]]		[[Category: Dna replication/adaptor protein/beta propeller domain]]
	[[Category: Replication]]		[[Category: Replication]]

OCA at 06:08, 29 November 2017

2017-11-29T06:08:58Z

←Older revision		Revision as of 06:08, 29 November 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5ogs is ~~ON HOLD~~	+	==Crystal structure of human AND-1 SepB domain==
-		+	<StructureSection load='5ogs' size='340' side='right' caption='[[5ogs]], [[Resolution\|resolution]] 2.50Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5ogs]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OGS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OGS FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLI:MALONATE+ION'>MLI</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ogs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ogs OCA], [http://pdbe.org/5ogs PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ogs RCSB], [http://www.ebi.ac.uk/pdbsum/5ogs PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ogs ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/WDHD1_HUMAN WDHD1_HUMAN]] Acts as a replication initiation factor that brings together the MCM2-7 helicase and the DNA polymerase alpha/primase complex in order to initiate DNA replication.<ref>PMID:19805216</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Pellegrini, L Luca]]
		+	[[Category: Simon, A C]]
		+	[[Category: Dna replication/adaptor protein/beta propeller domain]]
		+	[[Category: Replication]]

OCA: Protected "5ogs" [edit=sysop:move=sysop]

2017-09-27T12:25:12Z

Protected "5ogs" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:25, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5ogs is ON HOLD Authors: Description: Category: Unreleased Structures

2017-09-27T12:25:11Z

New page: '''Unreleased structure''' The entry 5ogs is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5ogs is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]