5x54 - Revision history

OCA at 07:54, 22 November 2023

2023-11-22T07:54:05Z

←Older revision		Revision as of 07:54, 22 November 2023
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	<StructureSection load='5x54' size='340' side='right'caption='[[5x54]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='5x54' size='340' side='right'caption='[[5x54]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5x54]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Human Human~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X54 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5X54 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5x54]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_T7 Escherichia phage T7] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X54 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5X54 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	<tr id='~~NonStdRes~~'><td class="sblockLbl"><b>[[~~Non-Standard_Residue~~\|~~NonStd Res~~:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">KEAP1, INRF2, KIAA0132, KLHL19 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5x54 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x54 OCA], [https://pdbe.org/5x54 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5x54 RCSB], [https://www.ebi.ac.uk/pdbsum/5x54 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5x54 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5x54 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x54 OCA], [~~http~~://pdbe.org/5x54 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5x54 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5x54 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5x54 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/KEAP1_HUMAN KEAP1_HUMAN]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Human~~]]	+	[[Category: Escherichia phage T7]]
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Kadotani, A]]	+	[[Category: Kadotani A]]
-	[[Category: Lane, W]]	+	[[Category: Lane W]]
-	[[Category: Snell, G]]	+	[[Category: Snell G]]
-	[[Category: Sogabe, S]]	+	[[Category: Sogabe S]]
-	~~[[Category: Complex]]~~	+
-	~~[[Category: Inhibitor]]~~	+
-	~~[[Category: Kelch domain]]~~	+
-	~~[[Category: Nrf2]]~~	+
-	~~[[Category: Oxidative stress]]~~	+
-	~~[[Category: Transcription]]~~	+
-	~~[[Category: Transcription-transcription inhibitor complex~~]]	+

OCA at 07:25, 7 October 2020

2020-10-07T07:25:53Z

←Older revision		Revision as of 07:25, 7 October 2020
Line 1:		Line 1:

	==Crystal structure of the Keap1 Kelch domain in complex with a tetrapeptide==		==Crystal structure of the Keap1 Kelch domain in complex with a tetrapeptide==
-	<StructureSection load='5x54' size='340' side='right' caption='[[5x54]], [[Resolution\|resolution]] 2.30Å' scene=''>	+	<StructureSection load='5x54' size='340' side='right'caption='[[5x54]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5x54]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X54 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5X54 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5x54]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X54 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5X54 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5x54 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x54 OCA], [http://pdbe.org/5x54 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x54 RCSB], [http://www.ebi.ac.uk/pdbsum/5x54 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x54 ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">KEAP1, INRF2, KIAA0132, KLHL19 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5x54 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x54 OCA], [http://pdbe.org/5x54 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x54 RCSB], [http://www.ebi.ac.uk/pdbsum/5x54 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x54 ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	</div>		</div>
	<div class="pdbe-citations 5x54" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5x54" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Kelch-like protein 3D structures\|Kelch-like protein 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Human]]
		+	[[Category: Large Structures]]
	[[Category: Kadotani, A]]		[[Category: Kadotani, A]]
	[[Category: Lane, W]]		[[Category: Lane, W]]

OCA at 14:06, 29 March 2017

2017-03-29T14:06:49Z

←Older revision		Revision as of 14:06, 29 March 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5x54 is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of the Keap1 Kelch domain in complex with a tetrapeptide==
		+	<StructureSection load='5x54' size='340' side='right' caption='[[5x54]], [[Resolution\|resolution]] 2.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5x54]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5X54 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5X54 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene></td></tr>
		+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5x54 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5x54 OCA], [http://pdbe.org/5x54 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5x54 RCSB], [http://www.ebi.ac.uk/pdbsum/5x54 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5x54 ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Keap1 constitutively binds to the transcription factor Nrf2 to promote its degradation, resulting in negative modulation of genes involved in cellular protection against oxidative stress. Keap1 is increasingly recognized as an attractive target for treating diseases involving oxidative stress, including cancer, atherosclerosis, diabetes, arthritis, and neurodegeneration. We used phage-display peptide screening to identify a tetrapeptide showing moderate binding affinity, which inhibits the interaction between Nrf2 and Keap1. The tetrapeptide does not include an ETGE motif, which is a commonly found consensus sequence in known peptidic inhibitors. In addition to affinity parameters, IC50, KD, and thermodynamic parameters, the crystal structure of the complex was determined to elucidate the binding conformation. The binding interactions resemble those of known small-molecule inhibitors as opposed to those of substrates and peptidic inhibitors. Although the tetrapeptide's affinity is not very high, our results may help facilitate the designing of small-molecule inhibitors during lead generation in drug discovery.

-	~~Authors: Sogabe~~, S., ~~Kadotani~~, A., ~~Lane~~, W., ~~Snell, G~~.	+	Discovery of a Kelch-like ECH-associated protein 1-inhibitory tetrapeptide and its structural characterization.,Sogabe S, Sakamoto K, Kamada Y, Kadotani A, Fukuda Y, Sakamoto JI Biochem Biophys Res Commun. 2017 Mar 14. pii: S0006-291X(17)30495-3. doi:, 10.1016/j.bbrc.2017.03.038. PMID:28315327<ref>PMID:28315327</ref>

-	~~Description: Crystal structure~~ of the ~~Keap1 Kelch domain in complex with a tetrapeptide~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category: Unreleased Structures]]~~	+	</div>
-	~~[[Category~~: ~~Snell, G]]~~	+	<div class="pdbe-citations 5x54" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Kadotani, A]]		[[Category: Kadotani, A]]
	[[Category: Lane, W]]		[[Category: Lane, W]]
		+	[[Category: Snell, G]]
	[[Category: Sogabe, S]]		[[Category: Sogabe, S]]
		+	[[Category: Complex]]
		+	[[Category: Inhibitor]]
		+	[[Category: Kelch domain]]
		+	[[Category: Nrf2]]
		+	[[Category: Oxidative stress]]
		+	[[Category: Transcription]]
		+	[[Category: Transcription-transcription inhibitor complex]]

OCA: Protected "5x54" [edit=sysop:move=sysop]

2017-03-09T15:45:49Z

Protected "5x54" [edit=sysop:move=sysop]

←Older revision

Revision as of 15:45, 9 March 2017

OCA: New page: '''Unreleased structure''' The entry 5x54 is ON HOLD until Paper Publication Authors: Sogabe, S., Kadotani, A., Lane, W., Snell, G. Description: Crystal structure of the Keap1 Kelch do...

2017-03-09T15:45:47Z

New page: '''Unreleased structure''' The entry 5x54 is ON HOLD until Paper Publication Authors: Sogabe, S., Kadotani, A., Lane, W., Snell, G. Description: Crystal structure of the Keap1 Kelch do...

New page

'''Unreleased structure'''

The entry 5x54 is ON HOLD until Paper Publication

Authors: Sogabe, S., Kadotani, A., Lane, W., Snell, G.

Description: Crystal structure of the Keap1 Kelch domain in complex with a tetrapeptide
[[Category: Unreleased Structures]]
[[Category: Snell, G]]
[[Category: Kadotani, A]]
[[Category: Lane, W]]
[[Category: Sogabe, S]]