5xg0 - Revision history

OCA at 08:01, 22 November 2023

2023-11-22T08:01:37Z

←Older revision		Revision as of 08:01, 22 November 2023
Line 3:		Line 3:
	<StructureSection load='5xg0' size='340' side='right'caption='[[5xg0]], [[Resolution\|resolution]] 1.58Å' scene=''>		<StructureSection load='5xg0' size='340' side='right'caption='[[5xg0]], [[Resolution\|resolution]] 1.58Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5xg0]] is a 3 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Idesa Idesa~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XG0 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5XG0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5xg0]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Ideonella_sakaiensis Ideonella sakaiensis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XG0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XG0 FirstGlance]. <br>
-	</td></tr><tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"~~>[[5xfx\|5xfx]], [[5xfz\|5xfz]], [[5xfy\|5xfy]]</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.58Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">ISF6_4831 ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=1547922 IDESA])</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xg0 OCA], [https://pdbe.org/5xg0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xg0 RCSB], [https://www.ebi.ac.uk/pdbsum/5xg0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xg0 ProSAT]</span></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Poly(ethylene_terephthalate)_hydrolase Poly(ethylene terephthalate) hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.101 3.1.1.101] </span></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5xg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xg0 OCA], [~~http~~://pdbe.org/5xg0 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5xg0 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5xg0 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5xg0 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/PETH_IDESA PETH_IDESA]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 22:		Line 22:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Idesa~~]]	+	[[Category: Ideonella sakaiensis]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chen~~, C C~~]]	+	[[Category: Chen CC]]
-	[[Category: Guo~~, R T~~]]	+	[[Category: Guo RT]]
-	[[Category: Han, X]]	+	[[Category: Han X]]
-	[[Category: Liu~~, W D~~]]	+	[[Category: Liu WD]]
-	[[Category: Zheng~~, Y Y]]~~	+	[[Category: Zheng YY]]
-	~~[[Category: Acidocalcisomal pyrophosphatase]]~~	+
-	~~[[Category: Hydrolase]]~~	+
-	~~[[Category: Inhibitor]]~~	+
-	~~[[Category: Metal-binding]]~~	+
-	~~[[Category: Substrate binding~~]]	+

OCA at 12:40, 25 December 2019

2019-12-25T12:40:55Z

←Older revision		Revision as of 12:40, 25 December 2019
Line 1:		Line 1:

	==Crystal structure of a novel PET hydrolase from Ideonella sakaiensis 201-F6==		==Crystal structure of a novel PET hydrolase from Ideonella sakaiensis 201-F6==
-	<StructureSection load='5xg0' size='340' side='right' caption='[[5xg0]], [[Resolution\|resolution]] 1.58Å' scene=''>	+	<StructureSection load='5xg0' size='340' side='right'caption='[[5xg0]], [[Resolution\|resolution]] 1.58Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5xg0]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Idesa Idesa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XG0 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5xg0]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Idesa Idesa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XG0 FirstGlance]. <br>
Line 23:		Line 23:
	</StructureSection>		</StructureSection>
	[[Category: Idesa]]		[[Category: Idesa]]
		+	[[Category: Large Structures]]
	[[Category: Chen, C C]]		[[Category: Chen, C C]]
	[[Category: Guo, R T]]		[[Category: Guo, R T]]

OCA at 08:57, 27 December 2017

2017-12-27T08:57:37Z

←Older revision		Revision as of 08:57, 27 December 2017
Line 3:		Line 3:
	<StructureSection load='5xg0' size='340' side='right' caption='[[5xg0]], [[Resolution\|resolution]] 1.58Å' scene=''>		<StructureSection load='5xg0' size='340' side='right' caption='[[5xg0]], [[Resolution\|resolution]] 1.58Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5xg0]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XG0 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5xg0]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Idesa Idesa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XG0 FirstGlance]. <br>
	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5xfx\|5xfx]], [[5xfz\|5xfz]], [[5xfy\|5xfy]]</td></tr>		</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5xfx\|5xfx]], [[5xfz\|5xfz]], [[5xfy\|5xfy]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">ISF6_4831 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1547922 IDESA])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Poly(ethylene_terephthalate)_hydrolase Poly(ethylene terephthalate) hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.101 3.1.1.101] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Poly(ethylene_terephthalate)_hydrolase Poly(ethylene terephthalate) hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.101 3.1.1.101] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xg0 OCA], [http://pdbe.org/5xg0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xg0 RCSB], [http://www.ebi.ac.uk/pdbsum/5xg0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xg0 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xg0 OCA], [http://pdbe.org/5xg0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xg0 RCSB], [http://www.ebi.ac.uk/pdbsum/5xg0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xg0 ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	PET hydrolase (PETase), which hydrolyzes polyethylene terephthalate (PET) into soluble building blocks, provides an attractive avenue for the bioconversion of plastics. Here we present the structures of a novel PETase from the PET-consuming microbe Ideonella sakaiensis in complex with substrate and product analogs. Through structural analyses, mutagenesis, and activity measurements, a substrate-binding mode is proposed, and several features critical for catalysis are elucidated.
		+
		+	Structural insight into catalytic mechanism of PET hydrolase.,Han X, Liu W, Huang JW, Ma J, Zheng Y, Ko TP, Xu L, Cheng YS, Chen CC, Guo RT Nat Commun. 2017 Dec 13;8(1):2106. doi: 10.1038/s41467-017-02255-z. PMID:29235460<ref>PMID:29235460</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5xg0" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Idesa]]
	[[Category: Chen, C C]]		[[Category: Chen, C C]]
	[[Category: Guo, R T]]		[[Category: Guo, R T]]

OCA at 06:20, 20 December 2017

2017-12-20T06:20:33Z

←Older revision		Revision as of 06:20, 20 December 2017
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5xg0 ~~is ON HOLD until Apr 11 2019~~	+	==Crystal structure of a novel PET hydrolase from Ideonella sakaiensis 201-F6==
-		+	<StructureSection load='5xg0' size='340' side='right' caption='[[5xg0]], [[Resolution\|resolution]] 1.58Å' scene=''>
-	~~Authors~~: ~~Han, X~~., ~~Liu~~, W.D., ~~Zheng~~, Y.Y., ~~Chen~~, C.C., ~~Guo~~, R.T.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5xg0]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XG0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XG0 FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure of a novel esterase~~	+	</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5xfx\|5xfx]], [[5xfz\|5xfz]], [[5xfy\|5xfy]]</td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Poly(ethylene_terephthalate)_hydrolase Poly(ethylene terephthalate) hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.1.101 3.1.1.101] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xg0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xg0 OCA], [http://pdbe.org/5xg0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xg0 RCSB], [http://www.ebi.ac.uk/pdbsum/5xg0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xg0 ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chen, C C]]
		+	[[Category: Guo, R T]]
	[[Category: Han, X]]		[[Category: Han, X]]
-	[[Category: ~~Chen~~, ~~C.C~~]]	+	[[Category: Liu, W D]]
-	[[Category: ~~Liu~~, ~~W.D~~]]	+	[[Category: Zheng, Y Y]]
-	[[Category: ~~Guo, R.T~~]]	+	[[Category: Acidocalcisomal pyrophosphatase]]
-	[[Category: ~~Zheng, Y.Y~~]]	+	[[Category: Hydrolase]]
		+	[[Category: Inhibitor]]
		+	[[Category: Metal-binding]]
		+	[[Category: Substrate binding]]

OCA at 15:26, 27 September 2017

2017-09-27T15:26:53Z

←Older revision		Revision as of 15:26, 27 September 2017
Line 7:		Line 7:
	Description: Crystal structure of a novel esterase		Description: Crystal structure of a novel esterase
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
		+	[[Category: Han, X]]
	[[Category: Chen, C.C]]		[[Category: Chen, C.C]]
	[[Category: Liu, W.D]]		[[Category: Liu, W.D]]
	[[Category: Guo, R.T]]		[[Category: Guo, R.T]]
-	[[Category: Han, X]]
	[[Category: Zheng, Y.Y]]		[[Category: Zheng, Y.Y]]

OCA at 13:02, 27 April 2017

2017-04-27T13:02:04Z

←Older revision		Revision as of 13:02, 27 April 2017
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5xg0 is ON HOLD	+	The entry 5xg0 is ON HOLD until Apr 11 2019

	Authors: Han, X., Liu, W.D., Zheng, Y.Y., Chen, C.C., Guo, R.T.		Authors: Han, X., Liu, W.D., Zheng, Y.Y., Chen, C.C., Guo, R.T.

OCA: Protected "5xg0" [edit=sysop:move=sysop]

2017-04-19T12:09:21Z

Protected "5xg0" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:09, 19 April 2017

OCA: New page: '''Unreleased structure''' The entry 5xg0 is ON HOLD Authors: Han, X., Liu, W.D., Zheng, Y.Y., Chen, C.C., Guo, R.T. Description: Crystal structure of a novel esterase [[Category: Unre...

2017-04-19T12:09:20Z

New page: '''Unreleased structure''' The entry 5xg0 is ON HOLD Authors: Han, X., Liu, W.D., Zheng, Y.Y., Chen, C.C., Guo, R.T. Description: Crystal structure of a novel esterase [[Category: Unre...

New page

'''Unreleased structure'''

The entry 5xg0 is ON HOLD

Authors: Han, X., Liu, W.D., Zheng, Y.Y., Chen, C.C., Guo, R.T.

Description: Crystal structure of a novel esterase
[[Category: Unreleased Structures]]
[[Category: Chen, C.C]]
[[Category: Liu, W.D]]
[[Category: Guo, R.T]]
[[Category: Han, X]]
[[Category: Zheng, Y.Y]]