5xic - Revision history

OCA at 08:02, 22 November 2023

2023-11-22T08:02:39Z

←Older revision		Revision as of 08:02, 22 November 2023
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	<StructureSection load='5xic' size='340' side='right'caption='[[5xic]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='5xic' size='340' side='right'caption='[[5xic]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5xic]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XIC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5XIC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5xic]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XIC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XIC FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=WXP:5,10,15-Triphenylporphyrin+cpntaining+FE'>WXP</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.45Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5xic FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xic OCA], [~~http~~://pdbe.org/5xic PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5xic RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5xic PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5xic ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=WXP:5,10,15-Triphenylporphyrin+cpntaining+FE'>WXP</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xic FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xic OCA], [https://pdbe.org/5xic PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xic RCSB], [https://www.ebi.ac.uk/pdbsum/5xic PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xic ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/G3XD33_PSEAE G3XD33_PSEAE]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Shiro, Y]]	+	[[Category: Pseudomonas aeruginosa PAO1]]
-	[[Category: Shoji, O]]	+	[[Category: Shiro Y]]
-	[[Category: Sugimoto, H]]	+	[[Category: Shoji O]]
-	[[Category: Uehara, H]]	+	[[Category: Sugimoto H]]
-	[[Category: Watanabe, Y]]	+	[[Category: Uehara H]]
-	~~[[Category: Heme acquisition protein]]~~	+	[[Category: Watanabe Y]]
-	~~[[Category: Transport protein~~]]	+

OCA at 06:50, 14 October 2020

2020-10-14T06:50:37Z

←Older revision		Revision as of 06:50, 14 October 2020
Line 1:		Line 1:

	==Crystal Structure of HasAp with Fe-5,10,15-triphenylporphyrin==		==Crystal Structure of HasAp with Fe-5,10,15-triphenylporphyrin==
-	<StructureSection load='5xic' size='340' side='right' caption='[[5xic]], [[Resolution\|resolution]] 1.45Å' scene=''>	+	<StructureSection load='5xic' size='340' side='right'caption='[[5xic]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5xic]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XIC OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5XIC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5xic]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XIC OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5XIC FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=WXP:5,10,15-Triphenylporphyrin+cpntaining+FE'>WXP</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=WXP:5,10,15-Triphenylporphyrin+cpntaining+FE'>WXP</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5xic FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xic OCA], [http://pdbe.org/5xic PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xic RCSB], [http://www.ebi.ac.uk/pdbsum/5xic PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xic ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5xic FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xic OCA], [http://pdbe.org/5xic PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xic RCSB], [http://www.ebi.ac.uk/pdbsum/5xic PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xic ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Shiro, Y]]		[[Category: Shiro, Y]]
	[[Category: Shoji, O]]		[[Category: Shoji, O]]

OCA at 07:20, 6 December 2017

2017-12-06T07:20:07Z

←Older revision		Revision as of 07:20, 6 December 2017
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-	'''Unreleased structure'''

-	~~The entry~~ 5xic is ~~ON HOLD~~	+	==Crystal Structure of HasAp with Fe-5,10,15-triphenylporphyrin==
		+	<StructureSection load='5xic' size='340' side='right' caption='[[5xic]], [[Resolution\|resolution]] 1.45Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5xic]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XIC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5XIC FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PE8:3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL'>PE8</scene>, <scene name='pdbligand=WXP:5,10,15-Triphenylporphyrin+cpntaining+FE'>WXP</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5xic FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xic OCA], [http://pdbe.org/5xic PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5xic RCSB], [http://www.ebi.ac.uk/pdbsum/5xic PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5xic ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Iron(III)-5,15-diphenylporphyrin and several derivatives were accommodated by HasA, a heme acquisition protein secreted by Pseudomonas aeruginosa, despite possessing bulky substituents at the meso position of the porphyrin. Crystal structure analysis revealed that the two phenyl groups at the meso positions of porphyrin extend outside HasA. It was shown that the growth of P. aeruginosa was inhibited in the presence of HasA coordinating the synthetic porphyrins under iron-limiting conditions, and that the structure of the synthetic porphyrins greatly affects the inhibition efficiency.

-	~~Authors: Shoji~~, O., Uehara, H., ~~Sugimoto~~, H., Shiro, Y., ~~Watanabe~~, Y.	+	Structures of the Heme Acquisition Protein HasA with Iron(III)-5,15-Diphenylporphyrin and Derivatives Thereof as an Artificial Prosthetic Group.,Uehara H, Shisaka Y, Nishimura T, Sugimoto H, Shiro Y, Miyake Y, Shinokubo H, Watanabe Y, Shoji O Angew Chem Int Ed Engl. 2017 Nov 27;56(48):15279-15283. doi:, 10.1002/anie.201707212. Epub 2017 Oct 9. PMID:28921809<ref>PMID:28921809</ref>

-	~~Description: Crystal Structure~~ of ~~HasAp with Fe~~-~~5,10,15~~-~~triphenylporphyrin~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
		+	<div class="pdbe-citations 5xic" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
	[[Category: Shiro, Y]]		[[Category: Shiro, Y]]
-	[[Category: Sugimoto, H]]
	[[Category: Shoji, O]]		[[Category: Shoji, O]]
		+	[[Category: Sugimoto, H]]
	[[Category: Uehara, H]]		[[Category: Uehara, H]]
	[[Category: Watanabe, Y]]		[[Category: Watanabe, Y]]
		+	[[Category: Heme acquisition protein]]
		+	[[Category: Transport protein]]

OCA at 15:29, 27 September 2017

2017-09-27T15:29:34Z

←Older revision		Revision as of 15:29, 27 September 2017
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	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Shiro, Y]]		[[Category: Shiro, Y]]
-	[[Category: Uehara, H]]
	[[Category: Sugimoto, H]]		[[Category: Sugimoto, H]]
	[[Category: Shoji, O]]		[[Category: Shoji, O]]
		+	[[Category: Uehara, H]]
	[[Category: Watanabe, Y]]		[[Category: Watanabe, Y]]

OCA: Protected "5xic" [edit=sysop:move=sysop]

2017-05-04T12:14:13Z

Protected "5xic" [edit=sysop:move=sysop]

←Older revision

Revision as of 12:14, 4 May 2017

OCA: New page: '''Unreleased structure''' The entry 5xic is ON HOLD Authors: Shoji, O., Uehara, H., Sugimoto, H., Shiro, Y., Watanabe, Y. Description: Crystal Structure of HasAp with Fe-5,10,15-triph...

2017-05-04T12:14:12Z

New page: '''Unreleased structure''' The entry 5xic is ON HOLD Authors: Shoji, O., Uehara, H., Sugimoto, H., Shiro, Y., Watanabe, Y. Description: Crystal Structure of HasAp with Fe-5,10,15-triph...

New page

'''Unreleased structure'''

The entry 5xic is ON HOLD

Authors: Shoji, O., Uehara, H., Sugimoto, H., Shiro, Y., Watanabe, Y.

Description: Crystal Structure of HasAp with Fe-5,10,15-triphenylporphyrin
[[Category: Unreleased Structures]]
[[Category: Shiro, Y]]
[[Category: Uehara, H]]
[[Category: Sugimoto, H]]
[[Category: Shoji, O]]
[[Category: Watanabe, Y]]