5y37 - Revision history

OCA at 08:20, 22 November 2023

2023-11-22T08:20:48Z

←Older revision		Revision as of 08:20, 22 November 2023
Line 3:		Line 3:
	<StructureSection load='5y37' size='340' side='right'caption='[[5y37]], [[Resolution\|resolution]] 1.36Å' scene=''>		<StructureSection load='5y37' size='340' side='right'caption='[[5y37]], [[Resolution\|resolution]] 1.36Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5y37]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Stra3 Stra3~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y37 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5Y37 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5y37]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_agalactiae_NEM316 Streptococcus agalactiae NEM316]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y37 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y37 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=NAD:NICOTINAMIDE~~-~~ADENINE-DINUCLEOTIDE'>NAD</scene>~~, ~~<scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.36Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~gbs1811 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=211110 STRA3])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5y37 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y37 OCA], [~~http~~://pdbe.org/5y37 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5y37 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5y37 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5y37 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y37 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y37 OCA], [https://pdbe.org/5y37 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y37 RCSB], [https://www.ebi.ac.uk/pdbsum/5y37 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y37 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q8E3E8_STRA3 Q8E3E8_STRA3]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Stra3~~]]	+	[[Category: Streptococcus agalactiae NEM316]]
-	[[Category: Jin, T]]	+	[[Category: Jin T]]
-	[[Category: Zhou, K]]	+	[[Category: Zhou K]]
-	~~[[Category: Group b streptococcus]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 10:02, 1 January 2020

2020-01-01T10:02:39Z

←Older revision		Revision as of 10:02, 1 January 2020
Line 1:		Line 1:

	==Crystal structure of GBS GAPDH==		==Crystal structure of GBS GAPDH==
-	<StructureSection load='5y37' size='340' side='right' caption='[[5y37]], [[Resolution\|resolution]] 1.36Å' scene=''>	+	<StructureSection load='5y37' size='340' side='right'caption='[[5y37]], [[Resolution\|resolution]] 1.36Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5y37]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y37 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y37 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5y37]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Stra3 Stra3]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y37 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y37 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">gbs1811 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211110 STRA3])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y37 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y37 OCA], [http://pdbe.org/5y37 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y37 RCSB], [http://www.ebi.ac.uk/pdbsum/5y37 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y37 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y37 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y37 OCA], [http://pdbe.org/5y37 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y37 RCSB], [http://www.ebi.ac.uk/pdbsum/5y37 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y37 ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) is a multifunctional enzyme that plays critical roles in bacterial pathogenesis in some pathogenic bacteria. In this study, the crystal structure of group B streptococcus GAPDH was determined at 1.36 A resolution. The structure contained an asymmetric mixed holo tetramer, with two NAD ligands bound to two protomers. Further structural analysis identified interesting phosphate ion-binding sites, which shed light on its catalytic mechanism.
		+
		+	High-resolution crystal structure of Streptococcus agalactiae glyceraldehyde-3-phosphate dehydrogenase.,Zhou K, Fan X, Li Y, Zhang C, Jin T Acta Crystallogr F Struct Biol Commun. 2018 Apr 1;74(Pt 4):236-244. doi:, 10.1107/S2053230X18003801. Epub 2018 Mar 23. PMID:29633972<ref>PMID:29633972</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5y37" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Glyceraldehyde-3-phosphate dehydrogenase 3D structures\|Glyceraldehyde-3-phosphate dehydrogenase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Stra3]]
	[[Category: Jin, T]]		[[Category: Jin, T]]
	[[Category: Zhou, K]]		[[Category: Zhou, K]]
	[[Category: Group b streptococcus]]		[[Category: Group b streptococcus]]
	[[Category: Transferase]]		[[Category: Transferase]]

OCA at 05:40, 18 April 2018

2018-04-18T05:40:57Z

←Older revision		Revision as of 05:40, 18 April 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5y37 ~~is ON HOLD until Paper Publication~~	+	==Crystal structure of GBS GAPDH==
-		+	<StructureSection load='5y37' size='340' side='right' caption='[[5y37]], [[Resolution\|resolution]] 1.36Å' scene=''>
-	~~Authors~~: ~~Jin, T~~.~~, Zhou, K~~.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5y37]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y37 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y37 FirstGlance]. <br>
-	~~Description~~: ~~Crystal structure of GBS GAPDH~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAD:NICOTINAMIDE-ADENINE-DINUCLEOTIDE'>NAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y37 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y37 OCA], [http://pdbe.org/5y37 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y37 RCSB], [http://www.ebi.ac.uk/pdbsum/5y37 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y37 ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
	[[Category: Jin, T]]		[[Category: Jin, T]]
	[[Category: Zhou, K]]		[[Category: Zhou, K]]
		+	[[Category: Group b streptococcus]]
		+	[[Category: Transferase]]

OCA: Protected "5y37" [edit=sysop:move=sysop]

2017-09-27T16:05:02Z

Protected "5y37" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:05, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5y37 is ON HOLD until Paper Publication Authors: Jin, T., Zhou, K. Description: Crystal structure of GBS GAPDH Category: Unreleased Structures ...

2017-09-27T16:05:00Z

New page: '''Unreleased structure''' The entry 5y37 is ON HOLD until Paper Publication Authors: Jin, T., Zhou, K. Description: Crystal structure of GBS GAPDH Category: Unreleased Structures ...

New page

'''Unreleased structure'''

The entry 5y37 is ON HOLD until Paper Publication

Authors: Jin, T., Zhou, K.

Description: Crystal structure of GBS GAPDH
[[Category: Unreleased Structures]]
[[Category: Jin, T]]
[[Category: Zhou, K]]