5yc2 - Revision history

OCA at 08:26, 22 November 2023

2023-11-22T08:26:19Z

←Older revision		Revision as of 08:26, 22 November 2023
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	<StructureSection load='5yc2' size='340' side='right'caption='[[5yc2]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='5yc2' size='340' side='right'caption='[[5yc2]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yc2]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Fission_yeast Fission yeast~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YC2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5YC2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yc2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C] and [https://en.wikipedia.org/wiki/Schizosaccharomyces_pombe_972h- Schizosaccharomyces pombe 972h-]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YC2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YC2 FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~bqt4~~, ~~SPBC19C7.10 (~~[~~http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=284812 Fission yeast~~]~~), rap1, SPBC1778~~.~~02 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=284812 Fission yeast])~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.704Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5yc2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yc2 OCA], [~~http~~://pdbe.org/5yc2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5yc2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5yc2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5yc2 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yc2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yc2 OCA], [https://pdbe.org/5yc2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yc2 RCSB], [https://www.ebi.ac.uk/pdbsum/5yc2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yc2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~SMT3_YEAST SMT3_YEAST~~]~~] Not known; suppressor~~ of ~~MIF2 mutations~~. [~~[http~~://www.uniprot.org/uniprot/~~RAP1_SCHPO RAP1_SCHPO~~]~~] Involved in the regulation~~ of ~~telomere length, clustering and has a specific role in telomere position effect (TPE)~~. ~~Unlike yeast, exhibits no effect in transcription regulation.<ref>PMID:11676924</ref> <ref>PMID:11676925</ref> <ref>PMID:19948484</ref>~~	+	[https://www.uniprot.org/uniprot/BQT4_SCHPO BQT4_SCHPO] Connects telomeres to the nuclear envelop (NE) during both vegetative growth and meiosis. This connection ensures clustering of telomeres to the spindle pole body (SPB) when cells enter meiotic prophase.<ref>PMID:19948484</ref> [https://www.uniprot.org/uniprot/SMT3_YEAST SMT3_YEAST] Not known; suppressor of MIF2 mutations.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Fission yeast]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Chen, Y~~]]	+	[[Category: Saccharomyces cerevisiae S288C]]
-	[[Category: ~~Hu, C~~]]	+	[[Category: Schizosaccharomyces pombe 972h-]]
-	[[Category: ~~Choromosome organization~~]]	+	[[Category: Chen Y]]
-	[[Category: ~~Membrane protein]]~~	+	[[Category: Hu C]]
-	~~[[Category: Nuclear envelope]]~~	+
-	~~[[Category: Spore formation]]~~	+
-	~~[[Category: Teleomere bouquet~~]]	+

OCA at 06:14, 10 July 2019

2019-07-10T06:14:50Z

←Older revision		Revision as of 06:14, 10 July 2019
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	==Crystal structure of inner membrane protein Bqt4 in complex with telomeric protein Rap1==		==Crystal structure of inner membrane protein Bqt4 in complex with telomeric protein Rap1==
-	<StructureSection load='5yc2' size='340' side='right' caption='[[5yc2]], [[Resolution\|resolution]] 2.70Å' scene=''>	+	<StructureSection load='5yc2' size='340' side='right'caption='[[5yc2]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[5yc2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Fission_yeast Fission yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YC2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YC2 FirstGlance]. <br>		<table><tr><td colspan='2'>[[5yc2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Fission_yeast Fission yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YC2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YC2 FirstGlance]. <br>
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	</StructureSection>		</StructureSection>
	[[Category: Fission yeast]]		[[Category: Fission yeast]]
		+	[[Category: Large Structures]]
	[[Category: Chen, Y]]		[[Category: Chen, Y]]
	[[Category: Hu, C]]		[[Category: Hu, C]]

OCA at 06:59, 5 December 2018

2018-12-05T06:59:49Z

←Older revision		Revision as of 06:59, 5 December 2018
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	<StructureSection load='5yc2' size='340' side='right' caption='[[5yc2]], [[Resolution\|resolution]] 2.70Å' scene=''>		<StructureSection load='5yc2' size='340' side='right' caption='[[5yc2]], [[Resolution\|resolution]] 2.70Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5yc2]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YC2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YC2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5yc2]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Fission_yeast Fission yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YC2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YC2 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yc2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yc2 OCA], [http://pdbe.org/5yc2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yc2 RCSB], [http://www.ebi.ac.uk/pdbsum/5yc2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yc2 ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">bqt4, SPBC19C7.10 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=284812 Fission yeast]), rap1, SPBC1778.02 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=284812 Fission yeast])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yc2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yc2 OCA], [http://pdbe.org/5yc2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yc2 RCSB], [http://www.ebi.ac.uk/pdbsum/5yc2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yc2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/SMT3_YEAST SMT3_YEAST]] Not known; suppressor of MIF2 mutations. [[http://www.uniprot.org/uniprot/RAP1_SCHPO RAP1_SCHPO]] Involved in the regulation of telomere length, clustering and has a specific role in telomere position effect (TPE). Unlike yeast, exhibits no effect in transcription regulation.<ref>PMID:11676924</ref> <ref>PMID:11676925</ref> <ref>PMID:19948484</ref>		[[http://www.uniprot.org/uniprot/SMT3_YEAST SMT3_YEAST]] Not known; suppressor of MIF2 mutations. [[http://www.uniprot.org/uniprot/RAP1_SCHPO RAP1_SCHPO]] Involved in the regulation of telomere length, clustering and has a specific role in telomere position effect (TPE). Unlike yeast, exhibits no effect in transcription regulation.<ref>PMID:11676924</ref> <ref>PMID:11676925</ref> <ref>PMID:19948484</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The dynamic association of chromosomes with the nuclear envelope (NE) is essential for chromosome maintenance. Schizosaccharomyces pombe inner nuclear membrane protein Bqt4 plays a critical role in connecting telomeres to the NE, mainly through a direct interaction with the telomeric protein Rap1. Bqt4 also interacts with Lem2 for pericentric heterochromatin maintenance. How Bqt4 coordinates the interactions with different proteins to exert their functions is unclear. Here, we report the crystal structures of the N-terminal domain of Bqt4 in complexes with Bqt4-binding motifs from Rap1, Lem2, and Sad1. The structural, biochemical and cellular analyses reveal that the N-terminal domain of Bqt4 is a protein-interaction module that recognizes a consensus motif and plays essential roles in telomere-NE association and meiosis progression. Phosphorylation of Bqt4-interacting proteins may act as a switch to regulate these interactions during cell cycles. Our studies provide structural insights into the identification and regulation of Bqt4-mediated interactions.
		+
		+	Structural insights into chromosome attachment to the nuclear envelope by an inner nuclear membrane protein Bqt4 in fission yeast.,Hu C, Inoue H, Sun W, Takeshita Y, Huang Y, Xu Y, Kanoh J, Chen Y Nucleic Acids Res. 2018 Nov 20. pii: 5193554. doi: 10.1093/nar/gky1186. PMID:30462301<ref>PMID:30462301</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 5yc2" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Fission yeast]]
	[[Category: Chen, Y]]		[[Category: Chen, Y]]
	[[Category: Hu, C]]		[[Category: Hu, C]]

OCA at 08:03, 14 November 2018

2018-11-14T08:03:25Z

←Older revision		Revision as of 08:03, 14 November 2018
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-	'''Unreleased structure'''

-	~~The entry~~ 5yc2 is ~~ON HOLD~~ ~~until Paper Publication~~	+	==Crystal structure of inner membrane protein Bqt4 in complex with telomeric protein Rap1==
-		+	<StructureSection load='5yc2' size='340' side='right' caption='[[5yc2]], [[Resolution\|resolution]] 2.70Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5yc2]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YC2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YC2 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yc2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yc2 OCA], [http://pdbe.org/5yc2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yc2 RCSB], [http://www.ebi.ac.uk/pdbsum/5yc2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yc2 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SMT3_YEAST SMT3_YEAST]] Not known; suppressor of MIF2 mutations. [[http://www.uniprot.org/uniprot/RAP1_SCHPO RAP1_SCHPO]] Involved in the regulation of telomere length, clustering and has a specific role in telomere position effect (TPE). Unlike yeast, exhibits no effect in transcription regulation.<ref>PMID:11676924</ref> <ref>PMID:11676925</ref> <ref>PMID:19948484</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chen, Y]]
		+	[[Category: Hu, C]]
		+	[[Category: Choromosome organization]]
		+	[[Category: Membrane protein]]
		+	[[Category: Nuclear envelope]]
		+	[[Category: Spore formation]]
		+	[[Category: Teleomere bouquet]]

OCA at 05:03, 18 July 2018

2018-07-18T05:03:47Z

←Older revision		Revision as of 05:03, 18 July 2018
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5yc2 is ON HOLD	+	The entry 5yc2 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA at 03:48, 25 April 2018

2018-04-25T03:48:15Z

←Older revision		Revision as of 03:48, 25 April 2018
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5yc2 is ON HOLD ~~until Paper Publication~~	+	The entry 5yc2 is ON HOLD

	Authors:		Authors:

OCA: Protected "5yc2" [edit=sysop:move=sysop]

2017-09-27T16:23:30Z

Protected "5yc2" [edit=sysop:move=sysop]

←Older revision

Revision as of 16:23, 27 September 2017

OCA: New page: '''Unreleased structure''' The entry 5yc2 is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

2017-09-27T16:23:29Z

New page: '''Unreleased structure''' The entry 5yc2 is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5yc2 is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]