5z1b - Revision history

OCA at 10:26, 27 March 2024

2024-03-27T10:26:13Z

←Older revision		Revision as of 10:26, 27 March 2024
Line 3:		Line 3:
	<StructureSection load='5z1b' size='340' side='right'caption='[[5z1b]], [[Resolution\|resolution]] 1.45Å' scene=''>		<StructureSection load='5z1b' size='340' side='right'caption='[[5z1b]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5z1b]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Bifidobacterium_dentium_atcc_27679~~ Bifidobacterium dentium ~~atcc~~ 27679]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z1B OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5Z1B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5z1b]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bifidobacterium_dentium_ATCC_27679 Bifidobacterium dentium ATCC 27679]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z1B OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Z1B FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=BDP:BETA~~-~~D-GLUCOPYRANURONIC+ACID'>BDP</scene>~~, ~~<scene name='pdbligand=SE2:3-HYDROXY-2H-CHROMEN-2-ONE'>SE2</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.45Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>uidA, HMPREF0168_2111 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id=~~871562 Bifidobacterium dentium ATCC 27679])</td~~><~~/tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BDP:BETA-D-GLUCOPYRANURONIC+ACID'>BDP</scene>, <scene name='pdbligand=SE2:3-HYDROXY-2H-CHROMEN-2-ONE'>SE2</scene></td></tr>
-	~~<tr id~~='~~activity'><td class~~=~~"sblockLbl"><b>Activity~~:~~</b~~></td><~~td class~~=~~"sblockDat"><span class~~=~~'plainlinks'>[http~~:~~//en.wikipedia.org/wiki/Beta~~-~~glucuronidase Beta~~-~~glucuronidase], with EC number [http://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=3.~~2~~.1.31 3.2.1.31]~~ </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5z1b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z1b OCA], [https://pdbe.org/5z1b PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5z1b RCSB], [https://www.ebi.ac.uk/pdbsum/5z1b PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5z1b ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5z1b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z1b OCA], [~~http~~://pdbe.org/5z1b PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5z1b RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5z1b PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5z1b ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/E0QAF3_9BIFI E0QAF3_9BIFI]
		+
		+	==See Also==
		+	*[[Glucuronisidase 3D structures\|Glucuronisidase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	~~[[Category: Beta-glucuronidase]]~~	+	[[Category: Bifidobacterium dentium ATCC 27679]]
-	[[Category: Bifidobacterium dentium ~~atcc~~ 27679]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Dashnyam, P]]	+	[[Category: Dashnyam P]]
-	[[Category: Lin~~, C H~~]]	+	[[Category: Lin CH]]
-	[[Category: Lin~~, H Y]]~~	+	[[Category: Lin HY]]
-	~~[[Category: Gh2]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 21:13, 28 October 2020

2020-10-28T21:13:03Z

←Older revision		Revision as of 21:13, 28 October 2020
Line 1:		Line 1:

	==Structure of Bifidobacterium dentium beta-glucuronidase complexed with coumarin-3-O-glucuronide==		==Structure of Bifidobacterium dentium beta-glucuronidase complexed with coumarin-3-O-glucuronide==
-	<StructureSection load='5z1b' size='340' side='right' caption='[[5z1b]], [[Resolution\|resolution]] 1.45Å' scene=''>	+	<StructureSection load='5z1b' size='340' side='right'caption='[[5z1b]], [[Resolution\|resolution]] 1.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5z1b]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z1B OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5Z1B FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5z1b]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bifidobacterium_dentium_atcc_27679 Bifidobacterium dentium atcc 27679]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z1B OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5Z1B FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BDP:BETA-D-GLUCOPYRANURONIC+ACID'>BDP</scene>, <scene name='pdbligand=SE2:3-HYDROXY-2H-CHROMEN-2-ONE'>SE2</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BDP:BETA-D-GLUCOPYRANURONIC+ACID'>BDP</scene>, <scene name='pdbligand=SE2:3-HYDROXY-2H-CHROMEN-2-ONE'>SE2</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">uidA, HMPREF0168_2111 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=871562 Bifidobacterium dentium ATCC 27679])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucuronidase Beta-glucuronidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.31 3.2.1.31] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucuronidase Beta-glucuronidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.31 3.2.1.31] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5z1b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z1b OCA], [http://pdbe.org/5z1b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z1b RCSB], [http://www.ebi.ac.uk/pdbsum/5z1b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z1b ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5z1b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z1b OCA], [http://pdbe.org/5z1b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z1b RCSB], [http://www.ebi.ac.uk/pdbsum/5z1b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z1b ProSAT]</span></td></tr>
	</table>		</table>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Beta-glucuronidase]]		[[Category: Beta-glucuronidase]]
		+	[[Category: Bifidobacterium dentium atcc 27679]]
		+	[[Category: Large Structures]]
	[[Category: Dashnyam, P]]		[[Category: Dashnyam, P]]
	[[Category: Lin, C H]]		[[Category: Lin, C H]]

OCA at 06:39, 12 December 2018

2018-12-12T06:39:58Z

←Older revision		Revision as of 06:39, 12 December 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 5z1b is ON HOLD until Paper Publication~~	+	==Structure of Bifidobacterium dentium beta-glucuronidase complexed with coumarin-3-O-glucuronide==
-		+	<StructureSection load='5z1b' size='340' side='right' caption='[[5z1b]], [[Resolution\|resolution]] 1.45Å' scene=''>
-	~~Authors: Dashnyam, P., Lin, H.Y., Lin, C.H.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[5z1b]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Z1B OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Z1B FirstGlance]. <br>
-	~~Description:~~ Structure of Bifidobacterium dentium beta-glucuronidase complexed with coumarin-3-O-glucuronide	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BDP:BETA-D-GLUCOPYRANURONIC+ACID'>BDP</scene>, <scene name='pdbligand=SE2:3-HYDROXY-2H-CHROMEN-2-ONE'>SE2</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucuronidase Beta-glucuronidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.31 3.2.1.31] </span></td></tr>
-	[[~~Category~~: ~~Lin~~, H.Y]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5z1b FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5z1b OCA], [http://pdbe.org/5z1b PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5z1b RCSB], [http://www.ebi.ac.uk/pdbsum/5z1b PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5z1b ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Lin~~, C.H]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Beta-glucuronidase]]
	[[Category: Dashnyam, P]]		[[Category: Dashnyam, P]]
		+	[[Category: Lin, C H]]
		+	[[Category: Lin, H Y]]
		+	[[Category: Gh2]]
		+	[[Category: Hydrolase]]

OCA at 04:37, 31 January 2018

2018-01-31T04:37:49Z

←Older revision		Revision as of 04:37, 31 January 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5z1b is ON HOLD	+	The entry 5z1b is ON HOLD until Paper Publication

	Authors: Dashnyam, P., Lin, H.Y., Lin, C.H.		Authors: Dashnyam, P., Lin, H.Y., Lin, C.H.

OCA: Protected "5z1b" [edit=sysop:move=sysop]

2018-01-03T04:51:43Z

Protected "5z1b" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:51, 3 January 2018

OCA: New page: '''Unreleased structure''' The entry 5z1b is ON HOLD Authors: Dashnyam, P., Lin, H.Y., Lin, C.H. Description: Structure of Bifidobacterium dentium beta-glucuronidase complexed with cou...

2018-01-03T04:51:42Z

New page: '''Unreleased structure''' The entry 5z1b is ON HOLD Authors: Dashnyam, P., Lin, H.Y., Lin, C.H. Description: Structure of Bifidobacterium dentium beta-glucuronidase complexed with cou...

New page

'''Unreleased structure'''

The entry 5z1b is ON HOLD

Authors: Dashnyam, P., Lin, H.Y., Lin, C.H.

Description: Structure of Bifidobacterium dentium beta-glucuronidase complexed with coumarin-3-O-glucuronide
[[Category: Unreleased Structures]]
[[Category: Lin, H.Y]]
[[Category: Lin, C.H]]
[[Category: Dashnyam, P]]