5zcd - Revision history

OCA at 08:51, 22 November 2023

2023-11-22T08:51:32Z

←Older revision		Revision as of 08:51, 22 November 2023
Line 3:		Line 3:
	<StructureSection load='5zcd' size='340' side='right'caption='[[5zcd]], [[Resolution\|resolution]] 1.71Å' scene=''>		<StructureSection load='5zcd' size='340' side='right'caption='[[5zcd]], [[Resolution\|resolution]] 1.71Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5zcd]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Bacsp Bacsp~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZCD OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=5ZCD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5zcd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._(in:_Bacteria) Bacillus sp. (in: Bacteria)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZCD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZCD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene><~~/td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.707Å</td></tr>
-	~~<tr id~~='~~related'><td class~~=~~"sblockLbl"><b>[[Related_structure\|Related~~:~~]]</b~~></td>~~<td class="sblockDat">[[5zcb\|5zcb]], [[5zcc\|5zcc]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900009:alpha-maltotriose'>PRD_900009</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=5zcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zcd OCA], [~~http~~://pdbe.org/5zcd PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5zcd RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5zcd PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5zcd ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zcd OCA], [https://pdbe.org/5zcd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zcd RCSB], [https://www.ebi.ac.uk/pdbsum/5zcd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zcd ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A2Z5WH92_BACSP A0A2Z5WH92_BACSP]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
Line 24:		Line 26:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Bacsp]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Kato, K]]	+	[[Category: Kato K]]
-	[[Category: Saburi, W]]	+	[[Category: Saburi W]]
-	[[Category: Yao, M]]	+	[[Category: Yao M]]
-	~~[[Category: Alpha-glucosidase]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 21:18, 28 October 2020

2020-10-28T21:18:20Z

←Older revision		Revision as of 21:18, 28 October 2020
Line 1:		Line 1:

	==Crystal structure of Alpha-glucosidase in complex with maltotriose==		==Crystal structure of Alpha-glucosidase in complex with maltotriose==
-	<StructureSection load='5zcd' size='340' side='right' caption='[[5zcd]], [[Resolution\|resolution]] 1.71Å' scene=''>	+	<StructureSection load='5zcd' size='340' side='right'caption='[[5zcd]], [[Resolution\|resolution]] 1.71Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5zcd]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZCD OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ZCD FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5zcd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacsp Bacsp]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZCD OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5ZCD FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=~~MLR~~:~~MALTOTRIOSE~~'>~~MLR~~</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5zcb\|5zcb]], [[5zcc\|5zcc]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5zcb\|5zcb]], [[5zcc\|5zcc]]</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5zcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zcd OCA], [http://pdbe.org/5zcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zcd RCSB], [http://www.ebi.ac.uk/pdbsum/5zcd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zcd ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5zcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zcd OCA], [http://pdbe.org/5zcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zcd RCSB], [http://www.ebi.ac.uk/pdbsum/5zcd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zcd ProSAT]</span></td></tr>
	</table>		</table>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
Line 17:		Line 17:
	</div>		</div>
	<div class="pdbe-citations 5zcd" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5zcd" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Alpha-glucosidase 3D structures\|Alpha-glucosidase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacsp]]
		+	[[Category: Large Structures]]
	[[Category: Kato, K]]		[[Category: Kato, K]]
	[[Category: Saburi, W]]		[[Category: Saburi, W]]

OCA at 08:12, 26 December 2018

2018-12-26T08:12:30Z

←Older revision		Revision as of 08:12, 26 December 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 5zcd is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of Alpha-glucosidase in complex with maltotriose==
		+	<StructureSection load='5zcd' size='340' side='right' caption='[[5zcd]], [[Resolution\|resolution]] 1.71Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5zcd]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZCD OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZCD FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MLR:MALTOTRIOSE'>MLR</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[5zcb\|5zcb]], [[5zcc\|5zcc]]</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zcd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zcd OCA], [http://pdbe.org/5zcd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zcd RCSB], [http://www.ebi.ac.uk/pdbsum/5zcd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zcd ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	alpha-Glucosidase hydrolyzes alpha-glucosides and transfers alpha-glucosyl residues to an acceptor through transglucosylation. In this study, GH13_31 alpha-glucosidase BspAG13_31A with high transglucosylation activity is reported in Bacillus sp. AHU2216 and biochemically and structurally characterized. This enzyme is specific to alpha-(1-->4)-glucosidic linkage as substrates and transglucosylation products. Maltose is the most preferred substrate. Crystal structures of BspAG13_31A wild-type for the substrate-free form and inactive acid/base mutant E256Q in complexes with maltooligosaccharides were solved at 1.6-2.5 A resolution. BspAG13_31A has a catalytic domain folded by an (beta/alpha)8 -barrel. In subsite +1, Ala200 and His203 on beta-->alpha loop 4 and Asn258 on beta-->alpha loop 5 are involved in the recognition of maltooligosaccharides. Structural basis for specificity of GH13_31 enzymes to alpha-(1-->4)-glucosidic linkage is first described.

-	~~Authors~~:	+	Function and structure of GH13_31 alpha-glucosidase with high alpha-(1-->4)-glucosidic linkage specificity and transglucosylation activity.,Auiewiriyanukul W, Saburi W, Kato K, Yao M, Mori H FEBS Lett. 2018 Jul;592(13):2268-2281. doi: 10.1002/1873-3468.13126. Epub 2018, Jun 20. PMID:29870070<ref>PMID:29870070</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5zcd" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Kato, K]]
		+	[[Category: Saburi, W]]
		+	[[Category: Yao, M]]
		+	[[Category: Alpha-glucosidase]]
		+	[[Category: Hydrolase]]

OCA: Protected "5zcd" [edit=sysop:move=sysop]

2018-02-28T04:53:40Z

Protected "5zcd" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:53, 28 February 2018

OCA: New page: '''Unreleased structure''' The entry 5zcd is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

2018-02-28T04:53:39Z

New page: '''Unreleased structure''' The entry 5zcd is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 5zcd is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]