5zhq - Revision history

OCA at 08:55, 22 November 2023

2023-11-22T08:55:38Z

←Older revision		Revision as of 08:55, 22 November 2023
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	<StructureSection load='5zhq' size='340' side='right'caption='[[5zhq]], [[Resolution\|resolution]] 3.00Å' scene=''>		<StructureSection load='5zhq' size='340' side='right'caption='[[5zhq]], [[Resolution\|resolution]] 3.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[5zhq]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Scylla_paramamosain Scylla paramamosain]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZHQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5ZHQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[5zhq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Scylla_paramamosain Scylla paramamosain]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZHQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZHQ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.002Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=5zhq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zhq OCA], [~~http~~://pdbe.org/5zhq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=5zhq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/5zhq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=5zhq ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zhq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zhq OCA], [https://pdbe.org/5zhq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zhq RCSB], [https://www.ebi.ac.uk/pdbsum/5zhq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zhq ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/KARG0_SCYPA KARG0_SCYPA] Catalyzes the reversible transfer of high energy ATP gamma-phosphate group to L-arginine.[UniProtKB:C9EIP1]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 5zhq" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 5zhq" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Arginine kinase 3D structures\|Arginine kinase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Scylla paramamosain]]		[[Category: Scylla paramamosain]]
-	[[Category: Jin~~, T C~~]]	+	[[Category: Jin TC]]
-	[[Category: Liu~~, G M~~]]	+	[[Category: Liu GM]]
-	[[Category: Yang, Y]]	+	[[Category: Yang Y]]
-	~~[[Category: Allergen]]~~	+
-	~~[[Category: Arginine kinase]]~~	+
-	~~[[Category: Food allergy]]~~	+
-	~~[[Category: Sea food allergy~~]]	+

OCA at 07:40, 20 March 2019

2019-03-20T07:40:46Z

←Older revision		Revision as of 07:40, 20 March 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 5zhq is ~~ON HOLD until Paper~~ Publication	+	==Crystal structure of Scylla paramamosain arginine kinase==
		+	<StructureSection load='5zhq' size='340' side='right'caption='[[5zhq]], [[Resolution\|resolution]] 3.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[5zhq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Scylla_paramamosain Scylla paramamosain]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZHQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZHQ FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zhq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zhq OCA], [http://pdbe.org/5zhq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zhq RCSB], [http://www.ebi.ac.uk/pdbsum/5zhq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zhq ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Shellfish are one of the most common causes of food allergy. Arginine kinase (AK) is known as an important allergen in shellfish. In the present study, AK from crab (Scylla paramamosain) was purified and its crystal structure was determined. A comparison of AK from S. paramamosain to AKs of other species showed high amino acid sequence and secondary structure identity, while the superposition of crystal structures of AKs from different species revealed only slight differences. Similarity of the linear epitope regions among species was observed in the epitope alignment of AKs; conformational epitopes were located in the regions where secondary structure was conserved. The structure of S. paramamosain AK is an accurate template for the analysis of the IgE binding pattern, and the structure conservation and epitope similarity of AKs among species could help to inform our understanding of the cross-reactivity and contribute to the prediction of cross-reactivity related epitopes.

-	~~Authors: Yang~~, Y., ~~Jin~~, T~~.C.~~, Liu~~, G~~.M.	+	Crystal structure determination of Scylla paramamosain arginine kinase, an allergen that may cause cross-reactivity among invertebrates.,Yang Y, Liu GY, Yang H, Hu MJ, Cao MJ, Su WJ, Jin T, Liu GM Food Chem. 2019 Jan 15;271:597-605. doi: 10.1016/j.foodchem.2018.08.003. Epub, 2018 Aug 2. PMID:30236721<ref>PMID:30236721</ref>

-	~~Description: Crystal structure~~ of Scylla paramamosain ~~arginine kinase~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 5zhq" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Scylla paramamosain]]
		+	[[Category: Jin, T C]]
		+	[[Category: Liu, G M]]
	[[Category: Yang, Y]]		[[Category: Yang, Y]]
-	[[Category: ~~Jin, T.C~~]]	+	[[Category: Allergen]]
-	[[Category: ~~Liu, G.M~~]]	+	[[Category: Arginine kinase]]
		+	[[Category: Food allergy]]
		+	[[Category: Sea food allergy]]

OCA at 05:46, 23 May 2018

2018-05-23T05:46:15Z

←Older revision		Revision as of 05:46, 23 May 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 5zhq is ON HOLD	+	The entry 5zhq is ON HOLD until Paper Publication

	Authors: Yang, Y., Jin, T.C., Liu, G.M.		Authors: Yang, Y., Jin, T.C., Liu, G.M.
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	Description: Crystal structure of Scylla paramamosain arginine kinase		Description: Crystal structure of Scylla paramamosain arginine kinase
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
-	[[Category: Liu, G.M]]
	[[Category: Yang, Y]]		[[Category: Yang, Y]]
	[[Category: Jin, T.C]]		[[Category: Jin, T.C]]
		+	[[Category: Liu, G.M]]

OCA: Protected "5zhq" [edit=sysop:move=sysop]

2018-03-21T06:01:15Z

Protected "5zhq" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:01, 21 March 2018

OCA: New page: '''Unreleased structure''' The entry 5zhq is ON HOLD Authors: Yang, Y., Jin, T.C., Liu, G.M. Description: Crystal structure of Scylla paramamosain arginine kinase [[Category: Unrelease...

2018-03-21T06:01:13Z

New page: '''Unreleased structure''' The entry 5zhq is ON HOLD Authors: Yang, Y., Jin, T.C., Liu, G.M. Description: Crystal structure of Scylla paramamosain arginine kinase [[Category: Unrelease...

New page

'''Unreleased structure'''

The entry 5zhq is ON HOLD

Authors: Yang, Y., Jin, T.C., Liu, G.M.

Description: Crystal structure of Scylla paramamosain arginine kinase
[[Category: Unreleased Structures]]
[[Category: Liu, G.M]]
[[Category: Yang, Y]]
[[Category: Jin, T.C]]