6a4u - Revision history

OCA at 09:18, 22 November 2023

2023-11-22T09:18:33Z

←Older revision		Revision as of 09:18, 22 November 2023
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	<StructureSection load='6a4u' size='340' side='right'caption='[[6a4u]], [[Resolution\|resolution]] 1.16Å' scene=''>		<StructureSection load='6a4u' size='340' side='right'caption='[[6a4u]], [[Resolution\|resolution]] 1.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6a4u]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Kuruma_prawn Kuruma prawn~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A4U OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6A4U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6a4u]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Penaeus_japonicus Penaeus japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A4U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6A4U FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.16Å</td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6a4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a4u OCA], [~~http~~://pdbe.org/6a4u PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6a4u RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6a4u PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6a4u ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6a4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a4u OCA], [https://pdbe.org/6a4u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6a4u RCSB], [https://www.ebi.ac.uk/pdbsum/6a4u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6a4u ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~T2B7E1_MARJA T2B7E1_MARJA]~~] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.[RuleBase:RU361145]	+	[https://www.uniprot.org/uniprot/T2B7E1_PENJP T2B7E1_PENJP] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.[RuleBase:RU361145]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Ferroxidase]]
-	[[Category: Kuruma prawn]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Masuda, T]]	+	[[Category: Penaeus japonicus]]
-	[[Category: Mikami, B]]	+	[[Category: Masuda T]]
-	[[Category: Zang, J]]	+	[[Category: Mikami B]]
-	[[Category: Zhao, G]]	+	[[Category: Zang J]]
-	~~[[Category: Crustacean]]~~	+	[[Category: Zhao G]]
-	~~[[Category: Ferritin]]~~	+
-	~~[[Category: Ferroxidase site]]~~	+
-	~~[[Category: Iron]]~~	+
-	~~[[Category: Metal binding protein]]~~	+
-	~~[[Category: Nucleation site~~]]	+

OCA at 21:26, 28 October 2020

2020-10-28T21:26:06Z

←Older revision		Revision as of 21:26, 28 October 2020
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	==The first crystal structure of crustacean ferritin that is a hybrid type of H and L ferritin==		==The first crystal structure of crustacean ferritin that is a hybrid type of H and L ferritin==
-	<StructureSection load='6a4u' size='340' side='right' caption='[[6a4u]], [[Resolution\|resolution]] 1.16Å' scene=''>	+	<StructureSection load='6a4u' size='340' side='right'caption='[[6a4u]], [[Resolution\|resolution]] 1.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6a4u]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Kuruma_prawn Kuruma prawn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A4U OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6A4U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6a4u]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Kuruma_prawn Kuruma prawn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A4U OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6A4U FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6a4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a4u OCA], [http://pdbe.org/6a4u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a4u RCSB], [http://www.ebi.ac.uk/pdbsum/6a4u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a4u ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6a4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a4u OCA], [http://pdbe.org/6a4u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a4u RCSB], [http://www.ebi.ac.uk/pdbsum/6a4u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a4u ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
Line 19:		Line 19:
	</div>		</div>
	<div class="pdbe-citations 6a4u" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6a4u" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ferritin 3D structures\|Ferritin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
Line 25:		Line 28:
	[[Category: Ferroxidase]]		[[Category: Ferroxidase]]
	[[Category: Kuruma prawn]]		[[Category: Kuruma prawn]]
		+	[[Category: Large Structures]]
	[[Category: Masuda, T]]		[[Category: Masuda, T]]
	[[Category: Mikami, B]]		[[Category: Mikami, B]]

OCA at 12:37, 7 November 2018

2018-11-07T12:37:14Z

←Older revision		Revision as of 12:37, 7 November 2018
Line 3:		Line 3:
	<StructureSection load='6a4u' size='340' side='right' caption='[[6a4u]], [[Resolution\|resolution]] 1.16Å' scene=''>		<StructureSection load='6a4u' size='340' side='right' caption='[[6a4u]], [[Resolution\|resolution]] 1.16Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6a4u]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A4U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6A4U FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6a4u]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Kuruma_prawn Kuruma prawn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A4U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6A4U FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>
Line 24:		Line 24:
	</StructureSection>		</StructureSection>
	[[Category: Ferroxidase]]		[[Category: Ferroxidase]]
		+	[[Category: Kuruma prawn]]
	[[Category: Masuda, T]]		[[Category: Masuda, T]]
	[[Category: Mikami, B]]		[[Category: Mikami, B]]

OCA at 06:02, 22 August 2018

2018-08-22T06:02:46Z

←Older revision		Revision as of 06:02, 22 August 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	The ~~entry~~ 6a4u is ~~ON HOLD~~	+	==The first crystal structure of crustacean ferritin that is a hybrid type of H and L ferritin==
		+	<StructureSection load='6a4u' size='340' side='right' caption='[[6a4u]], [[Resolution\|resolution]] 1.16Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6a4u]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A4U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6A4U FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6a4u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a4u OCA], [http://pdbe.org/6a4u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a4u RCSB], [http://www.ebi.ac.uk/pdbsum/6a4u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a4u ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/T2B7E1_MARJA T2B7E1_MARJA]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.[RuleBase:RU361145]
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Ferritin, a ubiquitous iron storage protein, has a crucial role in innate immunity in arthropods, which have no adaptive immune system. Arthropods are thought to have two types of ferritin molecules: the secreted type and the cytosolic type. Here, we present the first crystal structure of ferritin from crustacean, kuruma prawn (Marsupenaeus japonicus), at 1.16 A resolution. This shrimp ferritin (MjFer) is the cytosolic type, and its structure shows well-conserved ferritin fold composed of a 4-helix bundle that assembles into a cage-like 24-mer. The structure of MjFer was more similar to those of human and vertebrate ferritins than to that of the secreted-type arthropod ferritin from an insect. MjFer possesses both a ferroxidase site and a nucleation site, which are main characteristics of vertebrate H and L chain ferritins, respectively. The first crystal structure of crustacean ferritin, MjFer, has exceptionally high quality that provides the detailed structural information of metal moving pathway in ferritin. This article is protected by copyright. All rights reserved.

-	~~Authors~~:	+	The first crystal structure of crustacean ferritin that is a hybrid type of H and L ferritin.,Masuda T, Zang J, Zhao G, Mikami B Protein Sci. 2018 Aug 11. doi: 10.1002/pro.3495. PMID:30099791<ref>PMID:30099791</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 6a4u" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Ferroxidase]]
		+	[[Category: Masuda, T]]
		+	[[Category: Mikami, B]]
		+	[[Category: Zang, J]]
		+	[[Category: Zhao, G]]
		+	[[Category: Crustacean]]
		+	[[Category: Ferritin]]
		+	[[Category: Ferroxidase site]]
		+	[[Category: Iron]]
		+	[[Category: Metal binding protein]]
		+	[[Category: Nucleation site]]

OCA: Protected "6a4u" [edit=sysop:move=sysop]

2018-06-27T03:54:57Z

Protected "6a4u" [edit=sysop:move=sysop]

←Older revision

Revision as of 03:54, 27 June 2018

OCA: New page: '''Unreleased structure''' The entry 6a4u is ON HOLD Authors: Description: Category: Unreleased Structures

2018-06-27T03:54:56Z

New page: '''Unreleased structure''' The entry 6a4u is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6a4u is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]