6ak1 - Revision history

OCA at 09:33, 22 November 2023

2023-11-22T09:33:17Z

←Older revision		Revision as of 09:33, 22 November 2023
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	<StructureSection load='6ak1' size='340' side='right'caption='[[6ak1]], [[Resolution\|resolution]] 2.28Å' scene=''>		<StructureSection load='6ak1' size='340' side='right'caption='[[6ak1]], [[Resolution\|resolution]] 2.28Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6ak1]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Atcc_baa-113 Atcc baa-113~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AK1 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6AK1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ak1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Hyphomicrobium_sulfonivorans Hyphomicrobium sulfonivorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AK1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6AK1 FirstGlance]. <br>
-	</td></tr><tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat"~~>dmoA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&~~id~~=121290 ATCC BAA-113])</td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.284Å</td></tr>
-	~~<tr id='activity'><td class~~="~~sblockLbl~~">~~<b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dimethyl~~-~~sulfide_monooxygenase Dimethyl-sulfide monooxygenase]~~, ~~with EC number~~ [~~http://www~~.~~brenda-enzymes.info/php/result_flat.php4?ecno=1.14.13.131 1.14.13.131] </span>~~</td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ak1 OCA], [https://pdbe.org/6ak1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ak1 RCSB], [https://www.ebi.ac.uk/pdbsum/6ak1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ak1 ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ak1 OCA], [~~http~~://pdbe.org/6ak1 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6ak1 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6ak1 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6ak1 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/DMOA_HYPSL DMOA_HYPSL]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Atcc baa-113]]~~	+	[[Category: Hyphomicrobium sulfonivorans]]
-	~~[[Category: Dimethyl-sulfide monooxygenase~~]]	+
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Cao~~, H Y~~]]	+	[[Category: Cao HY]]
-	[[Category: Li~~, C Y~~]]	+	[[Category: Li CY]]
-	[[Category: Peng, M]]	+	[[Category: Peng M]]
-	[[Category: Wang, P]]	+	[[Category: Wang P]]
-	~~[[Category: Dimethylsulfide monooxygenase]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Tim barrel~~]]	+

OCA at 09:16, 18 December 2019

2019-12-18T09:16:01Z

←Older revision		Revision as of 09:16, 18 December 2019
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	==Crystal structure of DmoA from Hyphomicrobium sulfonivorans==		==Crystal structure of DmoA from Hyphomicrobium sulfonivorans==
-	<StructureSection load='6ak1' size='340' side='right' caption='[[6ak1]], [[Resolution\|resolution]] 2.28Å' scene=''>	+	<StructureSection load='6ak1' size='340' side='right'caption='[[6ak1]], [[Resolution\|resolution]] 2.28Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6ak1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AK1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6AK1 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ak1]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_baa-113 Atcc baa-113]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AK1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6AK1 FirstGlance]. <br>
-	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dimethyl-sulfide_monooxygenase Dimethyl-sulfide monooxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.13.131 1.14.13.131] </span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">dmoA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=121290 ATCC BAA-113])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dimethyl-sulfide_monooxygenase Dimethyl-sulfide monooxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.13.131 1.14.13.131] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ak1 OCA], [http://pdbe.org/6ak1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ak1 RCSB], [http://www.ebi.ac.uk/pdbsum/6ak1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ak1 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ak1 OCA], [http://pdbe.org/6ak1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ak1 RCSB], [http://www.ebi.ac.uk/pdbsum/6ak1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ak1 ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	DmoA is a monooxygenase which uses dioxygen (O2) and reduced flavin mononucleotide (FMNH2) to catalyze the oxidation of dimethylsulfide (DMS). Although it has been characterized, the structure of DmoA remains unknown. Here, the crystal structure of DmoA was determined to a resolution of 2.28 A and was compared with those of its homologues LadA and BdsA. The results showed that their overall structures are similar: they all share a conserved TIM-barrel fold which is composed of eight alpha-helices and eight beta-strands. In addition, they all have five additional insertions. Detailed comparison showed that the structures have notable differences despite their high sequence similarity. The substrate-binding pocket of DmoA is smaller compared with those of LadA and BdsA.
		+
		+	Crystal structure of the dimethylsulfide monooxygenase DmoA from Hyphomicrobium sulfonivorans.,Cao HY, Wang P, Peng M, Shao X, Chen XL, Li CY Acta Crystallogr F Struct Biol Commun. 2018 Dec 1;74(Pt 12):781-786. doi:, 10.1107/S2053230X18015844. Epub 2018 Nov 26. PMID:30511672<ref>PMID:30511672</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6ak1" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Monooxygenase 3D structures\|Monooxygenase 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Atcc baa-113]]
	[[Category: Dimethyl-sulfide monooxygenase]]		[[Category: Dimethyl-sulfide monooxygenase]]
		+	[[Category: Large Structures]]
	[[Category: Cao, H Y]]		[[Category: Cao, H Y]]
	[[Category: Li, C Y]]		[[Category: Li, C Y]]

OCA at 06:42, 12 December 2018

2018-12-12T06:42:08Z

←Older revision		Revision as of 06:42, 12 December 2018
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-	'''Unreleased structure'''

-	~~The entry~~ 6ak1 is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of DmoA from Hyphomicrobium sulfonivorans==
-		+	<StructureSection load='6ak1' size='340' side='right' caption='[[6ak1]], [[Resolution\|resolution]] 2.28Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6ak1]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6AK1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6AK1 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Dimethyl-sulfide_monooxygenase Dimethyl-sulfide monooxygenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.14.13.131 1.14.13.131] </span></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ak1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ak1 OCA], [http://pdbe.org/6ak1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ak1 RCSB], [http://www.ebi.ac.uk/pdbsum/6ak1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ak1 ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Dimethyl-sulfide monooxygenase]]
		+	[[Category: Cao, H Y]]
		+	[[Category: Li, C Y]]
		+	[[Category: Peng, M]]
		+	[[Category: Wang, P]]
		+	[[Category: Dimethylsulfide monooxygenase]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Tim barrel]]

OCA at 18:03, 19 September 2018

2018-09-19T18:03:17Z

←Older revision		Revision as of 18:03, 19 September 2018
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6ak1 is ON HOLD	+	The entry 6ak1 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6ak1" [edit=sysop:move=sysop]

2018-09-05T08:38:44Z

Protected "6ak1" [edit=sysop:move=sysop]

←Older revision

Revision as of 08:38, 5 September 2018

OCA: New page: '''Unreleased structure''' The entry 6ak1 is ON HOLD Authors: Description: Category: Unreleased Structures

2018-09-05T08:38:43Z

New page: '''Unreleased structure''' The entry 6ak1 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6ak1 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]