6deg - Revision history

OCA at 14:33, 13 March 2024

2024-03-13T14:33:49Z

←Older revision		Revision as of 14:33, 13 March 2024
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	<StructureSection load='6deg' size='340' side='right'caption='[[6deg]], [[Resolution\|resolution]] 2.45Å' scene=''>		<StructureSection load='6deg' size='340' side='right'caption='[[6deg]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6deg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DEG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6DEG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6deg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bartonella_birtlesii_LL-WM9 Bartonella birtlesii LL-WM9]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DEG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DEG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6deg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6deg OCA], [~~http~~://pdbe.org/6deg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6deg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6deg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6deg ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.45Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6deg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6deg OCA], [https://pdbe.org/6deg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6deg RCSB], [https://www.ebi.ac.uk/pdbsum/6deg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6deg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~J1IY24_9RHIZ J1IY24_9RHIZ]~~] Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.[PIRNR:PIRNR000804]	+	[https://www.uniprot.org/uniprot/J1IY24_9HYPH J1IY24_9HYPH] Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.[PIRNR:PIRNR000804]
		+
		+	==See Also==
		+	*[[DNA polymerase 3D structures\|DNA polymerase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bartonella birtlesii LL-WM9]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Structural genomic]]
-	[[Category: Antibiotic]]
-	[[Category: Dna binding protein]]
-	[[Category: Dna polymerase]]
-	[[Category: Dnan]]
-	[[Category: Griselimycin]]
-	[[Category: National institute of allergy and infectious disease]]
-	[[Category: Niaid]]
-	[[Category: Ssgcid]]

OCA at 09:05, 11 November 2020

2020-11-11T09:05:00Z

←Older revision		Revision as of 09:05, 11 November 2020
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	==Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella birtlesii LL-WM9==		==Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella birtlesii LL-WM9==
-	<StructureSection load='6deg' size='340' side='right' caption='[[6deg]], [[Resolution\|resolution]] 2.45Å' scene=''>	+	<StructureSection load='6deg' size='340' side='right'caption='[[6deg]], [[Resolution\|resolution]] 2.45Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6deg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DEG OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6DEG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6deg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DEG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6DEG FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6deg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6deg OCA], [http://pdbe.org/6deg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6deg RCSB], [http://www.ebi.ac.uk/pdbsum/6deg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6deg ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6deg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6deg OCA], [http://pdbe.org/6deg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6deg RCSB], [http://www.ebi.ac.uk/pdbsum/6deg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6deg ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Structural genomic]]		[[Category: Structural genomic]]
	[[Category: Antibiotic]]		[[Category: Antibiotic]]

OCA at 05:36, 30 May 2018

2018-05-30T05:36:50Z

←Older revision		Revision as of 05:36, 30 May 2018
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 6deg is ON HOLD~~	+	==Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella birtlesii LL-WM9==
-		+	<StructureSection load='6deg' size='340' side='right' caption='[[6deg]], [[Resolution\|resolution]] 2.45Å' scene=''>
-	~~Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6deg]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DEG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DEG FirstGlance]. <br>
-	~~Description:~~ Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella birtlesii LL-WM9	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6deg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6deg OCA], [http://pdbe.org/6deg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6deg RCSB], [http://www.ebi.ac.uk/pdbsum/6deg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6deg ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	</table>
-	[[Category: ~~Seattle~~ Structural ~~Genomics Center For Infectious Disease (~~Ssgcid)]]	+	== Function ==
		+	[[http://www.uniprot.org/uniprot/J1IY24_9RHIZ J1IY24_9RHIZ]] Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for processivity of DNA replication.[PIRNR:PIRNR000804]
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Structural genomic]]
		+	[[Category: Antibiotic]]
		+	[[Category: Dna binding protein]]
		+	[[Category: Dna polymerase]]
		+	[[Category: Dnan]]
		+	[[Category: Griselimycin]]
		+	[[Category: National institute of allergy and infectious disease]]
		+	[[Category: Niaid]]
		+	[[Category: Ssgcid]]

OCA: Protected "6deg" [edit=sysop:move=sysop]

2018-05-23T06:00:43Z

Protected "6deg" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:00, 23 May 2018

OCA: New page: '''Unreleased structure''' The entry 6deg is ON HOLD Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Description: Crystal structure of a DNA polymerase III ...

2018-05-23T06:00:42Z

New page: '''Unreleased structure''' The entry 6deg is ON HOLD Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Description: Crystal structure of a DNA polymerase III ...

New page

'''Unreleased structure'''

The entry 6deg is ON HOLD

Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Description: Crystal structure of a DNA polymerase III subunit beta DnaN sliding clamp from Bartonella birtlesii LL-WM9
[[Category: Unreleased Structures]]
[[Category: Seattle Structural Genomics Center For Infectious Disease (Ssgcid)]]