6dws - Revision history

OCA at 14:37, 13 March 2024

2024-03-13T14:37:29Z

←Older revision		Revision as of 14:37, 13 March 2024
Line 3:		Line 3:
	<StructureSection load='6dws' size='340' side='right'caption='[[6dws]], [[Resolution\|resolution]] 1.90Å' scene=''>		<StructureSection load='6dws' size='340' side='right'caption='[[6dws]], [[Resolution\|resolution]] 1.90Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6dws]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DWS OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6DWS FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6dws]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DWS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DWS FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=HFY:8~~-{[~~(2-chlorophenyl)methyl~~]~~amino}adenosine'>HFY</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.9Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks'>[http~~:~~//en.wikipedia.org/wiki/Non~~-~~chaperonin_molecular_chaperone_ATPase Non~~-~~chaperonin molecular chaperone ATPase~~], ~~with EC number [http~~:~~//www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.4.10 3.6.4.10]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HFY:8-{[(2-chlorophenyl)methyl]amino}adenosine'>HFY</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6dws FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dws OCA], [~~http~~://pdbe.org/6dws PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6dws RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6dws PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6dws ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dws FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dws OCA], [https://pdbe.org/6dws PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dws RCSB], [https://www.ebi.ac.uk/pdbsum/6dws PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dws ProSAT]</span></td></tr>
	</table>		</table>
	== Disease ==		== Disease ==
-	[~~[http~~://www.uniprot.org/uniprot/BIP_HUMAN BIP_HUMAN]] Autoantigen in rheumatoid arthritis.<ref>PMID:11160188</ref>	+	[https://www.uniprot.org/uniprot/BIP_HUMAN BIP_HUMAN] Autoantigen in rheumatoid arthritis.<ref>PMID:11160188</ref>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/BIP_HUMAN BIP_HUMAN]] Endoplasmic reticulum chaperone that plays a key role in protein folding and quality control in the endoplasmic reticulum lumen (PubMed:2294010, PubMed:23769672, PubMed:23990668, PubMed:28332555). Involved in the correct folding of proteins and degradation of misfolded proteins via its interaction with DNAJC10/ERdj5, probably to facilitate the release of DNAJC10/ERdj5 from its substrate (By similarity). Acts as a key repressor of the ERN1/IRE1-mediated unfolded protein response (UPR) (PubMed:1550958, PubMed:19538957). In the unstressed endoplasmic reticulum, recruited by DNAJB9/ERdj4 to the luminal region of ERN1/IRE1, leading to disrupt the dimerization of ERN1/IRE1, thereby inactivating ERN1/IRE1 (By similarity). Accumulation of misfolded protein in the endoplasmic reticulum causes release of HSPA5/BiP from ERN1/IRE1, allowing homodimerization and subsequent activation of ERN1/IRE1 (By similarity). Plays an auxiliary role in post-translational transport of small presecretory proteins across endoplasmic reticulum (ER). May function as an allosteric modulator for SEC61 channel-forming translocon complex, likely cooperating with SEC62 to enable the productive insertion of these precursors into SEC61 channel. Appears to specifically regulate translocation of precursors having inhibitory residues in their mature region that weaken channel gating.[UniProtKB:G3I8R9][UniProtKB:P20029]<ref>PMID:1550958</ref> <ref>PMID:19538957</ref> <ref>PMID:2294010</ref> <ref>PMID:23769672</ref> <ref>PMID:23990668</ref> <ref>PMID:28332555</ref> <ref>PMID:29719251</ref>	+	[https://www.uniprot.org/uniprot/BIP_HUMAN BIP_HUMAN] Endoplasmic reticulum chaperone that plays a key role in protein folding and quality control in the endoplasmic reticulum lumen (PubMed:2294010, PubMed:23769672, PubMed:23990668, PubMed:28332555). Involved in the correct folding of proteins and degradation of misfolded proteins via its interaction with DNAJC10/ERdj5, probably to facilitate the release of DNAJC10/ERdj5 from its substrate (By similarity). Acts as a key repressor of the ERN1/IRE1-mediated unfolded protein response (UPR) (PubMed:1550958, PubMed:19538957). In the unstressed endoplasmic reticulum, recruited by DNAJB9/ERdj4 to the luminal region of ERN1/IRE1, leading to disrupt the dimerization of ERN1/IRE1, thereby inactivating ERN1/IRE1 (By similarity). Accumulation of misfolded protein in the endoplasmic reticulum causes release of HSPA5/BiP from ERN1/IRE1, allowing homodimerization and subsequent activation of ERN1/IRE1 (By similarity). Plays an auxiliary role in post-translational transport of small presecretory proteins across endoplasmic reticulum (ER). May function as an allosteric modulator for SEC61 channel-forming translocon complex, likely cooperating with SEC62 to enable the productive insertion of these precursors into SEC61 channel. Appears to specifically regulate translocation of precursors having inhibitory residues in their mature region that weaken channel gating.[UniProtKB:G3I8R9][UniProtKB:P20029]<ref>PMID:1550958</ref> <ref>PMID:19538957</ref> <ref>PMID:2294010</ref> <ref>PMID:23769672</ref> <ref>PMID:23990668</ref> <ref>PMID:28332555</ref> <ref>PMID:29719251</ref>
		+
		+	==See Also==
		+	*[[Heat Shock Protein structures\|Heat Shock Protein structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Non-chaperonin molecular chaperone ATPase]]~~	+	[[Category: Antoshchenko T]]
-	[[Category: Antoshchenko, T]]	+	[[Category: Chen Y]]
-	[[Category: Chen, Y]]	+	[[Category: Huang Y]]
-	[[Category: Huang, Y]]	+	[[Category: Park HW]]
-	[[Category: Park~~, H W~~]]	+	[[Category: Smil D]]
-	[[Category: Smil, D]]	+	[[Category: Zepeda C]]
-	[[Category: Zepeda, C]]	+
-	~~[[Category: Adenosine analog]]~~	+
-	~~[[Category: Chaperone]]~~	+
-	~~[[Category: Human grp78]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 05:45, 3 July 2019

2019-07-03T05:45:00Z

←Older revision		Revision as of 05:45, 3 July 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 6dws is ON HOLD until Paper Publication~~	+	==Crystal structure of human GRP78 in complex with (2R,3R,4S,5R)-2-(6-amino-8-((2-chlorobenzyl)amino)-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4-diol==
-		+	<StructureSection load='6dws' size='340' side='right'caption='[[6dws]], [[Resolution\|resolution]] 1.90Å' scene=''>
-	~~Authors: Chen, Y., Antoshchenko, T., Smil, D., Zepeda, C., Huang, Y., Park, H.W.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6dws]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DWS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DWS FirstGlance]. <br>
-	~~Description:~~ Crystal structure of human GRP78 in complex with (2R,3R,4S,5R)-2-(6-amino-8-((2-chlorobenzyl)amino)-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4-diol	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HFY:8-{[(2-chlorophenyl)methyl]amino}adenosine'>HFY</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Non-chaperonin_molecular_chaperone_ATPase Non-chaperonin molecular chaperone ATPase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.4.10 3.6.4.10] </span></td></tr>
-	[[Category: ~~Park, H.W~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dws FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dws OCA], [http://pdbe.org/6dws PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dws RCSB], [http://www.ebi.ac.uk/pdbsum/6dws PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dws ProSAT]</span></td></tr>
		+	</table>
		+	== Disease ==
		+	[[http://www.uniprot.org/uniprot/BIP_HUMAN BIP_HUMAN]] Autoantigen in rheumatoid arthritis.<ref>PMID:11160188</ref>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/BIP_HUMAN BIP_HUMAN]] Endoplasmic reticulum chaperone that plays a key role in protein folding and quality control in the endoplasmic reticulum lumen (PubMed:2294010, PubMed:23769672, PubMed:23990668, PubMed:28332555). Involved in the correct folding of proteins and degradation of misfolded proteins via its interaction with DNAJC10/ERdj5, probably to facilitate the release of DNAJC10/ERdj5 from its substrate (By similarity). Acts as a key repressor of the ERN1/IRE1-mediated unfolded protein response (UPR) (PubMed:1550958, PubMed:19538957). In the unstressed endoplasmic reticulum, recruited by DNAJB9/ERdj4 to the luminal region of ERN1/IRE1, leading to disrupt the dimerization of ERN1/IRE1, thereby inactivating ERN1/IRE1 (By similarity). Accumulation of misfolded protein in the endoplasmic reticulum causes release of HSPA5/BiP from ERN1/IRE1, allowing homodimerization and subsequent activation of ERN1/IRE1 (By similarity). Plays an auxiliary role in post-translational transport of small presecretory proteins across endoplasmic reticulum (ER). May function as an allosteric modulator for SEC61 channel-forming translocon complex, likely cooperating with SEC62 to enable the productive insertion of these precursors into SEC61 channel. Appears to specifically regulate translocation of precursors having inhibitory residues in their mature region that weaken channel gating.[UniProtKB:G3I8R9][UniProtKB:P20029]<ref>PMID:1550958</ref> <ref>PMID:19538957</ref> <ref>PMID:2294010</ref> <ref>PMID:23769672</ref> <ref>PMID:23990668</ref> <ref>PMID:28332555</ref> <ref>PMID:29719251</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Non-chaperonin molecular chaperone ATPase]]
	[[Category: Antoshchenko, T]]		[[Category: Antoshchenko, T]]
-	[[Category: Zepeda, C]]
-	[[Category: Smil, D]]
	[[Category: Chen, Y]]		[[Category: Chen, Y]]
	[[Category: Huang, Y]]		[[Category: Huang, Y]]
		+	[[Category: Park, H W]]
		+	[[Category: Smil, D]]
		+	[[Category: Zepeda, C]]
		+	[[Category: Adenosine analog]]
		+	[[Category: Chaperone]]
		+	[[Category: Human grp78]]
		+	[[Category: Transferase]]

OCA at 05:26, 18 July 2018

2018-07-18T05:26:38Z

←Older revision		Revision as of 05:26, 18 July 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6dws is ON HOLD	+	The entry 6dws is ON HOLD until Paper Publication

	Authors: Chen, Y., Antoshchenko, T., Smil, D., Zepeda, C., Huang, Y., Park, H.W.		Authors: Chen, Y., Antoshchenko, T., Smil, D., Zepeda, C., Huang, Y., Park, H.W.

OCA: Protected "6dws" [edit=sysop:move=sysop]

2018-07-04T05:48:30Z

Protected "6dws" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:48, 4 July 2018

OCA: New page: '''Unreleased structure''' The entry 6dws is ON HOLD Authors: Chen, Y., Antoshchenko, T., Smil, D., Zepeda, C., Huang, Y., Park, H.W. Description: Crystal structure of human GRP78 in c...

2018-07-04T05:48:29Z

New page: '''Unreleased structure''' The entry 6dws is ON HOLD Authors: Chen, Y., Antoshchenko, T., Smil, D., Zepeda, C., Huang, Y., Park, H.W. Description: Crystal structure of human GRP78 in c...

New page

'''Unreleased structure'''

The entry 6dws is ON HOLD

Authors: Chen, Y., Antoshchenko, T., Smil, D., Zepeda, C., Huang, Y., Park, H.W.

Description: Crystal structure of human GRP78 in complex with (2R,3R,4S,5R)-2-(6-amino-8-((2-chlorobenzyl)amino)-9H-purin-9-yl)-5-(hydroxymethyl)tetrahydrofuran-3,4-diol
[[Category: Unreleased Structures]]
[[Category: Park, H.W]]
[[Category: Antoshchenko, T]]
[[Category: Zepeda, C]]
[[Category: Smil, D]]
[[Category: Chen, Y]]
[[Category: Huang, Y]]