6fkg - Revision history

OCA at 12:29, 9 May 2024

2024-05-09T12:29:08Z

←Older revision		Revision as of 12:29, 9 May 2024
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	<StructureSection load='6fkg' size='340' side='right'caption='[[6fkg]], [[Resolution\|resolution]] 1.80Å' scene=''>		<StructureSection load='6fkg' size='340' side='right'caption='[[6fkg]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6fkg]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Myctu Myctu~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FKG OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6FKG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6fkg]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FKG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6FKG FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=GOL:GLYCEROL'>GOL</scene~~></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.8Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~Rv1989c, MTCY39.30 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=83332 MYCTU]), Rv1990c, MTCY39.29 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6fkg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fkg OCA], [~~http~~://pdbe.org/6fkg PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6fkg RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6fkg PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6fkg ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6fkg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fkg OCA], [https://pdbe.org/6fkg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6fkg RCSB], [https://www.ebi.ac.uk/pdbsum/6fkg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6fkg ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/MBCT_MYCTU MBCT_MYCTU] Toxic component of a type II toxin-antitoxin (TA) system. Neutralized by cognate antitoxin MbcA (PubMed:30315706, PubMed:30792174). Degrades NAD(+) by phosphorolysis. Expression in the absence of its cognate antitoxin MbcA causes dramatic reduction of intracellular NAD(+) levels and is deleterious to cell growth, causing cell death. In a SCID mouse infection model, mice infected with bacteria overexpressing this protein survive longer. Overexpression of this protein in a mouse infection model at 21 days leads to bacterial death, and shows a synergistic 100-fold increase in mouse survival when combined with isoniazid treatment (PubMed:30792174).<ref>PMID:30315706</ref> <ref>PMID:30792174</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Myctu~~]]	+	[[Category: Mycobacterium tuberculosis H37Rv]]
-	[[Category: Cianci, M]]	+	[[Category: Cianci M]]
-	[[Category: Freire~~, D M~~]]	+	[[Category: Freire DM]]
-	[[Category: Parret~~, A H.A~~]]	+	[[Category: Parret AHA]]
-	[[Category: Pogenberg, V]]	+	[[Category: Pogenberg V]]
-	[[Category: Schneider~~, T R~~]]	+	[[Category: Schneider TR]]
-	[[Category: Wilmanns, M]]	+	[[Category: Wilmanns M]]
-	~~[[Category: Toxin]]~~	+
-	~~[[Category: Toxin-antitoxin system phosphorylase nad+-binding~~]]	+

OCA at 08:14, 3 April 2019

2019-04-03T08:14:06Z

←Older revision		Revision as of 08:14, 3 April 2019
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	==Crystal structure of the M.tuberculosis MbcT-MbcA toxin-antitoxin complex.==		==Crystal structure of the M.tuberculosis MbcT-MbcA toxin-antitoxin complex.==
-	<StructureSection load='6fkg' size='340' side='right' caption='[[6fkg]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='6fkg' size='340' side='right'caption='[[6fkg]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6fkg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FKG FirstGlance]. <br>		<table><tr><td colspan='2'>[[6fkg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FKG FirstGlance]. <br>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Myctu]]		[[Category: Myctu]]
	[[Category: Cianci, M]]		[[Category: Cianci, M]]

OCA at 08:22, 6 March 2019

2019-03-06T08:22:53Z

←Older revision		Revision as of 08:22, 6 March 2019
Line 1:		Line 1:

	==Crystal structure of the M.tuberculosis MbcT-MbcA toxin-antitoxin complex.==		==Crystal structure of the M.tuberculosis MbcT-MbcA toxin-antitoxin complex.==
-	<StructureSection load='6fkg' size='340' side='right' caption='[[6fkg]], [[Resolution\|resolution]] 1.80Å' scene=''>	+	<StructureSection load='6fkg' size='340' side='right' caption='[[6fkg]], [[Resolution\|resolution]] 1.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6fkg]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FKG FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6fkg]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Myctu Myctu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FKG FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">Rv1989c, MTCY39.30 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU]), Rv1990c, MTCY39.29 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83332 MYCTU])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fkg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fkg OCA], [http://pdbe.org/6fkg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fkg RCSB], [http://www.ebi.ac.uk/pdbsum/6fkg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fkg ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fkg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fkg OCA], [http://pdbe.org/6fkg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fkg RCSB], [http://www.ebi.ac.uk/pdbsum/6fkg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fkg ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Toxin-antitoxin (TA) systems regulate fundamental cellular processes in bacteria and represent potential therapeutic targets. We report a new RES-Xre TA system in multiple human pathogens, including Mycobacterium tuberculosis. The toxin, MbcT, is bactericidal unless neutralized by its antitoxin MbcA. To investigate the mechanism, we solved the 1.8 A-resolution crystal structure of the MbcTA complex. We found that MbcT resembles secreted NAD(+)-dependent bacterial exotoxins, such as diphtheria toxin. Indeed, MbcT catalyzes NAD(+) degradation in vitro and in vivo. Unexpectedly, the reaction is stimulated by inorganic phosphate, and our data reveal that MbcT is a NAD(+) phosphorylase. In the absence of MbcA, MbcT triggers rapid M. tuberculosis cell death, which reduces mycobacterial survival in macrophages and prolongs the survival of infected mice. Our study expands the molecular activities employed by bacterial TA modules and uncovers a new class of enzymes that could be exploited to treat tuberculosis and other infectious diseases.
		+
		+	An NAD(+) Phosphorylase Toxin Triggers Mycobacterium tuberculosis Cell Death.,Freire DM, Gutierrez C, Garza-Garcia A, Grabowska AD, Sala AJ, Ariyachaokun K, Panikova T, Beckham KSH, Colom A, Pogenberg V, Cianci M, Tuukkanen A, Boudehen YM, Peixoto A, Botella L, Svergun DI, Schnappinger D, Schneider TR, Genevaux P, de Carvalho LPS, Wilmanns M, Parret AHA, Neyrolles O Mol Cell. 2019 Feb 18. pii: S1097-2765(19)30048-6. doi:, 10.1016/j.molcel.2019.01.028. PMID:30792174<ref>PMID:30792174</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6fkg" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Myctu]]
	[[Category: Cianci, M]]		[[Category: Cianci, M]]
	[[Category: Freire, D M]]		[[Category: Freire, D M]]

OCA at 15:18, 27 February 2019

2019-02-27T15:18:35Z

←Older revision		Revision as of 15:18, 27 February 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6fkg is ~~ON HOLD until Paper Publication~~	+	==Crystal structure of the M.tuberculosis MbcT-MbcA toxin-antitoxin complex.==
-		+	<StructureSection load='6fkg' size='340' side='right' caption='[[6fkg]], [[Resolution\|resolution]] 1.80Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6fkg]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FKG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FKG FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-	[[Category: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fkg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fkg OCA], [http://pdbe.org/6fkg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fkg RCSB], [http://www.ebi.ac.uk/pdbsum/6fkg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fkg ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Cianci, M]]
		+	[[Category: Freire, D M]]
		+	[[Category: Parret, A H.A]]
		+	[[Category: Pogenberg, V]]
		+	[[Category: Schneider, T R]]
		+	[[Category: Wilmanns, M]]
		+	[[Category: Toxin]]
		+	[[Category: Toxin-antitoxin system phosphorylase nad+-binding]]

OCA: Protected "6fkg" [edit=sysop:move=sysop]

2018-01-31T04:57:53Z

Protected "6fkg" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:57, 31 January 2018

OCA: New page: '''Unreleased structure''' The entry 6fkg is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

2018-01-31T04:57:52Z

New page: '''Unreleased structure''' The entry 6fkg is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6fkg is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]