6gda - Revision history

OCA at 11:30, 13 November 2019

2019-11-13T11:30:40Z

←Older revision		Revision as of 11:30, 13 November 2019
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	<StructureSection load='6gda' size='340' side='right'caption='[[6gda]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='6gda' size='340' side='right'caption='[[6gda]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6gda]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GDA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GDA FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6gda]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GDA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GDA FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EVB:sulfonato-calix[8]arene'>EVB</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EVB:sulfonato-calix[8]arene'>EVB</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6gd6\|6gd6]], [[6gd7\|6gd7]], [[6gd8\|6gd8]], [[6gd9\|6gd9]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6gd6\|6gd6]], [[6gd7\|6gd7]], [[6gd8\|6gd8]], [[6gd9\|6gd9]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">CYC1, YJR048W, J1653 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gda FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gda OCA], [http://pdbe.org/6gda PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gda RCSB], [http://www.ebi.ac.uk/pdbsum/6gda PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gda ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gda FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gda OCA], [http://pdbe.org/6gda PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gda RCSB], [http://www.ebi.ac.uk/pdbsum/6gda PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gda ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/CYC1_YEAST CYC1_YEAST]] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.		[[http://www.uniprot.org/uniprot/CYC1_YEAST CYC1_YEAST]] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Protein crystals with their precise, periodic array of functional building blocks have potential applications in biomaterials, sensing, and catalysis. This paper describes how a highly porous crystalline framework of a cationic redox protein and an anionic macrocycle can be modulated by a small cationic effector. Ternary composites of protein ( approximately 13 kDa), calix[8]arene ( approximately 1.5 kDa), and effector ( approximately 0.2 kDa) formed distinct crystalline architectures, dependent on the effector concentration and the crystallization technique. A combination of X-ray crystallography and density functional theory (DFT) calculations was used to decipher the framework variations, which appear to be dependent on a calixarene conformation change mediated by the effector. This "switch" calixarene was observed in three states, each of which is associated with a different interaction network. Two structures obtained by co-crystallization with the effector contained an additional protein "pillar", resulting in framework duplication and decreased porosity. These results suggest how protein assembly can be engineered by supramolecular host-guest interactions.
		+
		+	Tuning Protein Frameworks via Auxiliary Supramolecular Interactions.,Engilberge S, Rennie ML, Dumont E, Crowley PB ACS Nano. 2019 Sep 24;13(9):10343-10350. doi: 10.1021/acsnano.9b04115. Epub 2019 , Sep 10. PMID:31490058<ref>PMID:31490058</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6gda" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Cytochrome C 3D structures\|Cytochrome C 3D structures]]
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Baker's yeast]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Crowley, P B]]		[[Category: Crowley, P B]]

OCA at 08:47, 1 May 2019

2019-05-01T08:47:43Z

←Older revision		Revision as of 08:47, 1 May 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6gda is ~~ON HOLD until Paper Publication~~	+	==Cytochrome c in complex with Sulfonato-calix[8]arene, P43212 form soaked with Spermine==
-		+	<StructureSection load='6gda' size='340' side='right'caption='[[6gda]], [[Resolution\|resolution]] 2.80Å' scene=''>
-	~~Authors~~: ~~Rennie~~, M.L., ~~Fox~~, G.C., ~~Crowley~~, P.B.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6gda]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GDA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GDA FirstGlance]. <br>
-	~~Description~~: Cytochrome c in complex ~~with Sulfonato-calix[8]arene~~, ~~P43212 form soaked with Spermine~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EVB:sulfonato-calix[8]arene'>EVB</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=SPM:SPERMINE'>SPM</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6gd6\|6gd6]], [[6gd7\|6gd7]], [[6gd8\|6gd8]], [[6gd9\|6gd9]]</td></tr>
-	[[Category: Crowley, P.B]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gda FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gda OCA], [http://pdbe.org/6gda PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gda RCSB], [http://www.ebi.ac.uk/pdbsum/6gda PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gda ProSAT]</span></td></tr>
-	[[Category: Rennie, M.L]]	+	</table>
-	[[Category: ~~Fox, G.C~~]]	+	== Function ==
		+	[[http://www.uniprot.org/uniprot/CYC1_YEAST CYC1_YEAST]] Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Crowley, P B]]
		+	[[Category: Fox, G C]]
		+	[[Category: Rennie, M L]]
		+	[[Category: Assembly]]
		+	[[Category: Calixarene]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Scaffold]]
		+	[[Category: Supramolecular]]

OCA at 05:02, 9 May 2018

2018-05-09T05:02:35Z

←Older revision		Revision as of 05:02, 9 May 2018
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6gda is ON HOLD	+	The entry 6gda is ON HOLD until Paper Publication

	Authors: Rennie, M.L., Fox, G.C., Crowley, P.B.		Authors: Rennie, M.L., Fox, G.C., Crowley, P.B.

OCA: Protected "6gda" [edit=sysop:move=sysop]

2018-05-02T06:53:09Z

Protected "6gda" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:53, 2 May 2018

OCA: New page: '''Unreleased structure''' The entry 6gda is ON HOLD Authors: Rennie, M.L., Fox, G.C., Crowley, P.B. Description: Cytochrome c in complex with Sulfonato-calix[8]arene, P43212 form soak...

2018-05-02T06:53:08Z

New page: '''Unreleased structure''' The entry 6gda is ON HOLD Authors: Rennie, M.L., Fox, G.C., Crowley, P.B. Description: Cytochrome c in complex with Sulfonato-calix[8]arene, P43212 form soak...

New page

'''Unreleased structure'''

The entry 6gda is ON HOLD

Authors: Rennie, M.L., Fox, G.C., Crowley, P.B.

Description: Cytochrome c in complex with Sulfonato-calix[8]arene, P43212 form soaked with Spermine
[[Category: Unreleased Structures]]
[[Category: Crowley, P.B]]
[[Category: Rennie, M.L]]
[[Category: Fox, G.C]]