6h76 - Revision history

OCA at 07:14, 16 October 2019

2019-10-16T07:14:52Z

←Older revision		Revision as of 07:14, 16 October 2019
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	<StructureSection load='6h76' size='340' side='right'caption='[[6h76]], [[Resolution\|resolution]] 1.50Å' scene=''>		<StructureSection load='6h76' size='340' side='right'caption='[[6h76]], [[Resolution\|resolution]] 1.50Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6h76]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6H76 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6H76 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6h76]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Haein Haein]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6H76 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6H76 FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=SLB:5-N-ACETYL-BETA-D-NEURAMINIC+ACID'>SLB</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=SLB:5-N-ACETYL-BETA-D-NEURAMINIC+ACID'>SLB</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">siaP, HI_0146 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=71421 HAEIN])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6h76 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6h76 OCA], [http://pdbe.org/6h76 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6h76 RCSB], [http://www.ebi.ac.uk/pdbsum/6h76 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6h76 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6h76 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6h76 OCA], [http://pdbe.org/6h76 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6h76 RCSB], [http://www.ebi.ac.uk/pdbsum/6h76 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6h76 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/SIAP_HAEIN SIAP_HAEIN]] Part of the tripartite ATP-independent periplasmic (TRAP) transport system SiaPT involved in the uptake of sialic acid. This protein specifically binds sialic acid with high affinity.		[[http://www.uniprot.org/uniprot/SIAP_HAEIN SIAP_HAEIN]] Part of the tripartite ATP-independent periplasmic (TRAP) transport system SiaPT involved in the uptake of sialic acid. This protein specifically binds sialic acid with high affinity.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Solvent organization is a key but underexploited contributor to the thermodynamics of protein-ligand recognition, with implications for ligand discovery, drug resistance, and protein engineering. Here, we explore the contribution of solvent to ligand binding in the Haemophilus influenzae virulence protein SiaP. By introducing a single mutation without direct ligand contacts, we observed a >1000-fold change in sialic acid binding affinity. Crystallographic and calorimetric data of wild-type and mutant SiaP showed that this change results from an enthalpically unfavorable perturbation of the solvent network. This disruption is reflected by changes in the normalized atomic displacement parameters of crystallographic water molecules. In SiaP's enclosed cavity, relative differences in water-network dynamics serve as a simple predictor of changes in the free energy of binding upon changing protein, ligand, or both. This suggests that solvent structure is an evolutionary constraint on protein sequence that contributes to ligand affinity and selectivity.
		+
		+	Water Networks Can Determine the Affinity of Ligand Binding to Proteins.,Darby JF, Hopkins AP, Shimizu S, Roberts SM, Brannigan JA, Turkenburg JP, Thomas GH, Hubbard RE, Fischer M J Am Chem Soc. 2019 Oct 9;141(40):15818-15826. doi: 10.1021/jacs.9b06275. Epub, 2019 Sep 26. PMID:31518131<ref>PMID:31518131</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6h76" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Haein]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Brannigan, J A]]		[[Category: Brannigan, J A]]

OCA at 16:28, 14 August 2019

2019-08-14T16:28:54Z

←Older revision		Revision as of 16:28, 14 August 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6h76 is ~~ON HOLD~~	+	==SiaP in complex with Neu5Ac (RT)==
-		+	<StructureSection load='6h76' size='340' side='right'caption='[[6h76]], [[Resolution\|resolution]] 1.50Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6h76]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6H76 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6H76 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CS:CESIUM+ION'>CS</scene>, <scene name='pdbligand=SLB:5-N-ACETYL-BETA-D-NEURAMINIC+ACID'>SLB</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6h76 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6h76 OCA], [http://pdbe.org/6h76 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6h76 RCSB], [http://www.ebi.ac.uk/pdbsum/6h76 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6h76 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/SIAP_HAEIN SIAP_HAEIN]] Part of the tripartite ATP-independent periplasmic (TRAP) transport system SiaPT involved in the uptake of sialic acid. This protein specifically binds sialic acid with high affinity.
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Brannigan, J A]]
		+	[[Category: Darby, J F]]
		+	[[Category: Fischer, M]]
		+	[[Category: Hubbard, R E]]
		+	[[Category: Turkenburg, J]]
		+	[[Category: Sialic acid]]
		+	[[Category: Transport protein]]
		+	[[Category: Trap transporter]]

OCA: Protected "6h76" [edit=sysop:move=sysop]

2018-08-09T20:06:17Z

Protected "6h76" [edit=sysop:move=sysop]

←Older revision

Revision as of 20:06, 9 August 2018

OCA: New page: '''Unreleased structure''' The entry 6h76 is ON HOLD Authors: Description: Category: Unreleased Structures

2018-08-09T20:06:16Z

New page: '''Unreleased structure''' The entry 6h76 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6h76 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]