6hwi - Revision history

OCA at 01:33, 11 April 2020

2020-04-11T01:33:20Z

←Older revision		Revision as of 01:33, 11 April 2020
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	<SX load='6hwi' size='340' side='right' viewer='molstar' caption='[[6hwi]], [[Resolution\|resolution]] 7.20Å' scene=''>		<SX load='6hwi' size='340' side='right' viewer='molstar' caption='[[6hwi]], [[Resolution\|resolution]] 7.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6hwi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mpmv Mpmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HWI OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6HWI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6hwi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mpmv Mpmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HWI OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6HWI FirstGlance]. <br>
	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">gag-pro-pol ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11855 MPMV])</td></tr>		</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">gag-pro-pol ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11855 MPMV])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6hwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hwi OCA], [http://pdbe.org/6hwi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hwi RCSB], [http://www.ebi.ac.uk/pdbsum/6hwi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hwi ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6hwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hwi OCA], [http://pdbe.org/6hwi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hwi RCSB], [http://www.ebi.ac.uk/pdbsum/6hwi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hwi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==

OCA at 21:57, 6 March 2020

2020-03-06T21:57:27Z

←Older revision		Revision as of 21:57, 6 March 2020
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	==Immature M-PMV capsid hexamer structure in intact virus particles==		==Immature M-PMV capsid hexamer structure in intact virus particles==
-	<~~StructureSection~~ load='6hwi' size='340' side='right' caption='[[6hwi]], [[Resolution\|resolution]] 7.20Å' scene=''>	+	<SX load='6hwi' size='340' side='right' viewer='molstar' caption='[[6hwi]], [[Resolution\|resolution]] 7.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6hwi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mpmv Mpmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HWI FirstGlance]. <br>		<table><tr><td colspan='2'>[[6hwi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mpmv Mpmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HWI FirstGlance]. <br>
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	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
		+	[[Category: Large Structures]]
	[[Category: Mpmv]]		[[Category: Mpmv]]
	[[Category: Briggs, J A.G]]		[[Category: Briggs, J A.G]]

OCA at 09:02, 19 December 2018

2018-12-19T09:02:14Z

←Older revision		Revision as of 09:02, 19 December 2018
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	<StructureSection load='6hwi' size='340' side='right' caption='[[6hwi]], [[Resolution\|resolution]] 7.20Å' scene=''>		<StructureSection load='6hwi' size='340' side='right' caption='[[6hwi]], [[Resolution\|resolution]] 7.20Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6hwi]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HWI FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6hwi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Mpmv Mpmv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HWI FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6hwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hwi OCA], [http://pdbe.org/6hwi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hwi RCSB], [http://www.ebi.ac.uk/pdbsum/6hwi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hwi ProSAT]</span></td></tr>	+	</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">gag-pro-pol ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11855 MPMV])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6hwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hwi OCA], [http://pdbe.org/6hwi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hwi RCSB], [http://www.ebi.ac.uk/pdbsum/6hwi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hwi ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Mpmv]]
	[[Category: Briggs, J A.G]]		[[Category: Briggs, J A.G]]
	[[Category: Dolezal, M]]		[[Category: Dolezal, M]]

OCA at 06:46, 5 December 2018

2018-12-05T06:46:58Z

←Older revision		Revision as of 06:46, 5 December 2018
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-	'''Unreleased structure'''

-	The entry ~~6hwi~~ is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Immature M-PMV capsid hexamer structure in intact virus particles==
		+	<StructureSection load='6hwi' size='340' side='right' caption='[[6hwi]], [[Resolution\|resolution]] 7.20Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6hwi]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HWI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6HWI FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6hwi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hwi OCA], [http://pdbe.org/6hwi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6hwi RCSB], [http://www.ebi.ac.uk/pdbsum/6hwi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6hwi ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/POL_MPMV POL_MPMV]] Matrix protein p10: Matrix protein. Nucleocapsid protein p14: Nucleocapsid protein. Capsid protein p27: Capsid protein. Protease 17 kDa: The aspartyl protease mediates proteolytic cleavages of Gag and Gag-Pol polyproteins during or shortly after the release of the virion from the plasma membrane. Cleavages take place as an ordered, step-wise cascade to yield mature proteins. This process is called maturation. Displays maximal activity during the budding process just prior to particle release from the cell.[PROSITE-ProRule:PRU00275]<ref>PMID:9636364</ref> Protease 13 kDa: The aspartyl protease mediates proteolytic cleavages of Gag and Gag-Pol polyproteins during or shortly after the release of the virion from the plasma membrane. Cleavages take place as an ordered, step-wise cascade to yield mature proteins. This process is called maturation. Displays maximal activity during the budding process just prior to particle release from the cell.[PROSITE-ProRule:PRU00275]<ref>PMID:9636364</ref> G-patch peptide: Enhances the activity of the reverse transcriptase. May be part of the mature RT.<ref>PMID:22171253</ref> Reverse transcriptase/ribonuclease H: RT is a multifunctional enzyme that converts the viral dimeric RNA genome into dsDNA in the cytoplasm, shortly after virus entry into the cell. This enzyme displays a DNA polymerase activity that can copy either DNA or RNA templates, and a ribonuclease H (RNase H) activity that cleaves the RNA strand of RNA-DNA heteroduplexes in a partially processive 3' to 5' endonucleasic mode. Conversion of viral genomic RNA into dsDNA requires many steps. A tRNA binds to the primer-binding site (PBS) situated at the 5' end of the viral RNA. RT uses the 3' end of the tRNA primer to perfom a short round of RNA-dependent minus-strand DNA synthesis. The reading proceeds through the U5 region and ends after the repeated (R) region which is present at both ends of viral RNA. The portion of the RNA-DNA heteroduplex is digested by the RNase H, resulting in a ssDNA product attached to the tRNA primer. This ssDNA/tRNA hybridizes with the identical R region situated at the 3' end of viral RNA. This template exchange, known as minus-strand DNA strong stop transfer, can be either intra- or intermolecular. RT uses the 3' end of this newly synthesized short ssDNA to perfom the RNA-dependent minus-strand DNA synthesis of the whole template. RNase H digests the RNA template except for a polypurine tract (PPT) situated at the 5' end of the genome. It is not clear if both polymerase and RNase H activities are simultaneous. RNase H probably can proceed both in a polymerase-dependent (RNA cut into small fragments by the same RT performing DNA synthesis) and a polymerase-independent mode (cleavage of remaining RNA fragments by free RTs). Secondly, RT performs DNA-directed plus-strand DNA synthesis using the PPT that has not been removed by RNase H as primers. PPT and tRNA primers are then removed by RNase H. The 3' and 5' ssDNA PBS regions hybridize to form a circular dsDNA intermediate. Strand displacement synthesis by RT to the PBS and PPT ends produces a blunt ended, linear dsDNA copy of the viral genome that includes long terminal repeats (LTRs) at both ends.[PROSITE-ProRule:PRU00405] Integrase: Catalyzes viral DNA integration into the host chromosome, by performing a series of DNA cutting and joining reactions.<ref>PMID:28458055</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Retroviruses assemble and bud from infected cells in an immature form and require proteolytic maturation for infectivity. The CA (capsid) domains of the Gag polyproteins assemble a protein lattice as a truncated sphere in the immature virion. Proteolytic cleavage of Gag induces dramatic structural rearrangements; a subset of cleaved CA subsequently assembles into the mature core, whose architecture varies among retroviruses. Murine leukemia virus (MLV) is the prototypical gamma-retrovirus and serves as the basis of retroviral vectors, but the structure of the MLV CA layer is unknown. Here we have combined X-ray crystallography with cryoelectron tomography to determine the structures of immature and mature MLV CA layers within authentic viral particles. This reveals the structural changes associated with maturation, and, by comparison with HIV-1, uncovers conserved and variable features. In contrast to HIV-1, most MLV CA is used for assembly of the mature core, which adopts variable, multilayered morphologies and does not form a closed structure. Unlike in HIV-1, there is similarity between protein-protein interfaces in the immature MLV CA layer and those in the mature CA layer, and structural maturation of MLV could be achieved through domain rotations that largely maintain hexameric interactions. Nevertheless, the dramatic architectural change on maturation indicates that extensive disassembly and reassembly are required for mature core growth. The core morphology suggests that wrapping of the genome in CA sheets may be sufficient to protect the MLV ribonucleoprotein during cell entry.

-	~~Authors~~:	+	Structure and architecture of immature and mature murine leukemia virus capsids.,Qu K, Glass B, Dolezal M, Schur FKM, Murciano B, Rein A, Rumlova M, Ruml T, Krausslich HG, Briggs JAG Proc Natl Acad Sci U S A. 2018 Nov 26. pii: 1811580115. doi:, 10.1073/pnas.1811580115. PMID:30478053<ref>PMID:30478053</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased Structures~~]]	+	</div>
		+	<div class="pdbe-citations 6hwi" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Briggs, J A.G]]
		+	[[Category: Dolezal, M]]
		+	[[Category: Glass, B]]
		+	[[Category: Kraeusslich, H G]]
		+	[[Category: Qu, K]]
		+	[[Category: Rein, A]]
		+	[[Category: Ruml, T]]
		+	[[Category: Rumlova, M]]
		+	[[Category: Schur, F K.M]]
		+	[[Category: Capsid]]
		+	[[Category: Hexamer]]
		+	[[Category: M-pmv]]
		+	[[Category: Viral protein]]

OCA: Protected "6hwi" [edit=sysop:move=sysop]

2018-10-24T04:11:22Z

Protected "6hwi" [edit=sysop:move=sysop]

←Older revision

Revision as of 04:11, 24 October 2018

OCA: New page: '''Unreleased structure''' The entry 6hwi is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

2018-10-24T04:11:20Z

New page: '''Unreleased structure''' The entry 6hwi is ON HOLD until Paper Publication Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6hwi is ON HOLD until Paper Publication

Authors:

Description:
[[Category: Unreleased Structures]]