6i9p - Revision history

OCA at 11:49, 24 January 2024

2024-01-24T11:49:55Z

←Older revision		Revision as of 11:49, 24 January 2024
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	<StructureSection load='6i9p' size='340' side='right'caption='[[6i9p]], [[Resolution\|resolution]] 1.25Å' scene=''>		<StructureSection load='6i9p' size='340' side='right'caption='[[6i9p]], [[Resolution\|resolution]] 1.25Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6i9p]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I9P OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6I9P FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6i9p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lithobates_catesbeianus Lithobates catesbeianus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6I9P FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name~~=~~'pdbligand=CL:CHLORIDE+ION'>CL</scene~~>, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.25Å</td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>~~[http:~~/~~/en.wikipedia.org/wiki/Ferroxidase Ferroxidase]~~, ~~with EC number [http~~:~~//www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1]~~ </~~span~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6i9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i9p OCA], [~~http~~://pdbe.org/6i9p PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6i9p RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6i9p PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6i9p ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6i9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i9p OCA], [https://pdbe.org/6i9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6i9p RCSB], [https://www.ebi.ac.uk/pdbsum/6i9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6i9p ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/FRI2_LITCT FRI2_LITCT]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.	+	[https://www.uniprot.org/uniprot/FRI2_LITCT FRI2_LITCT] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6i9p" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6i9p" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ferritin 3D structures\|Ferritin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Ferroxidase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Mangani, S~~]]	+	[[Category: Lithobates catesbeianus]]
-	[[Category: Pisa, F Di]]	+	[[Category: Di Pisa F]]
-	[[Category: ~~Pozzi, C~~]]	+	[[Category: Mangani S]]
-	[[Category: ~~Ferroxidase process]]~~	+	[[Category: Pozzi C]]
-	~~[[Category: H54n variant]]~~	+
-	~~[[Category: Iron-free state]]~~	+
-	~~[[Category: Oxidoreductase]]~~	+
-	~~[[Category: Rana catesbeiana h' ferritin~~]]	+

OCA at 06:48, 23 May 2019

2019-05-23T06:48:36Z

←Older revision		Revision as of 06:48, 23 May 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6i9p is ~~ON HOLD until Paper~~ Publication	+	==Iron-free state of Rana catesbeiana H' ferritin variant H54N==
		+	<StructureSection load='6i9p' size='340' side='right'caption='[[6i9p]], [[Resolution\|resolution]] 1.25Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6i9p]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6I9P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6I9P FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ferroxidase Ferroxidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.16.3.1 1.16.3.1] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6i9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6i9p OCA], [http://pdbe.org/6i9p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6i9p RCSB], [http://www.ebi.ac.uk/pdbsum/6i9p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6i9p ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FRI2_LITCT FRI2_LITCT]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Human H and Rana catesbeiana H' subunits in vertebrate ferritin protein cages catalyze the Fe(II) oxidation by molecular oxygen and promote the ferric oxide biomineral synthesis. By depositing iron biomineral, ferritins also prevent potentially toxic reactions products from Fe(II)-based Fenton chemistry. Recent work from our laboratory was aimed to describe the iron pathways within ferritin, from entrance into the cage to the ferroxidase site, and to understand the role played by amino-acid residues in iron trafficking and catalysis. Our approach exploits anomalous X-ray diffraction from ferritin crystals, exposed to a ferrous salt, to track transient iron binding sites along the path towards a well-defined di-iron site where they get oxidized by oxygen. Coupling structure determination with solution kinetic measurements on selected variants, allows validating the role played by key residues on the catalytic iron oxidation. Our previous studies on H' ferritin indicated the regulatory role played by His54, and by its human counterpart Gln58, on guiding Fe(II) ions to the catalytic site. Here, we have investigated the effects induced by substituting the wild type His54 with Asn54, having different iron coordination properties. We have obtained a series of atomic-resolution crystal structures that provide time-dependent snapshots of iron bound at different locations in the H' ferritin H54N variant. The comparison with H' ferritin and H' ferritin H54Q variant leads to identify a new iron binding site. Our kinetic and structural data support the role of H' ferritin residue 54 in regulating the access of Fe(II) ions to the catalytic site.

-	~~Authors: Pozzi~~, C., Di Pisa, F., ~~Mangani~~, S.	+	Effect of the point mutation H54N on the ferroxidase process of Rana catesbeiana H' ferritin.,Pozzi C, Di Pisa F, Lalli D, Rosa C, Turano P, Mangani S J Inorg Biochem. 2019 May 7;197:110697. doi: 10.1016/j.jinorgbio.2019.110697. PMID:31075719<ref>PMID:31075719</ref>

-	~~Description: Iron-free state~~ of ~~Rana catesbeiana H' ferritin variant H54N~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6i9p" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Ferroxidase]]
		+	[[Category: Large Structures]]
	[[Category: Mangani, S]]		[[Category: Mangani, S]]
-	[[Category: Di Pisa, F]]	+	[[Category: Pisa, F Di]]
	[[Category: Pozzi, C]]		[[Category: Pozzi, C]]
		+	[[Category: Ferroxidase process]]
		+	[[Category: H54n variant]]
		+	[[Category: Iron-free state]]
		+	[[Category: Oxidoreductase]]
		+	[[Category: Rana catesbeiana h' ferritin]]

OCA: Protected "6i9p" [edit=sysop:move=sysop]

2018-12-05T05:00:05Z

Protected "6i9p" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:00, 5 December 2018

OCA: New page: '''Unreleased structure''' The entry 6i9p is ON HOLD until Paper Publication Authors: Pozzi, C., Di Pisa, F., Mangani, S. Description: Iron-free state of Rana catesbeiana H' ferritin v...

2018-12-05T05:00:04Z

New page: '''Unreleased structure''' The entry 6i9p is ON HOLD until Paper Publication Authors: Pozzi, C., Di Pisa, F., Mangani, S. Description: Iron-free state of Rana catesbeiana H' ferritin v...

New page

'''Unreleased structure'''

The entry 6i9p is ON HOLD until Paper Publication

Authors: Pozzi, C., Di Pisa, F., Mangani, S.

Description: Iron-free state of Rana catesbeiana H' ferritin variant H54N
[[Category: Unreleased Structures]]
[[Category: Mangani, S]]
[[Category: Di Pisa, F]]
[[Category: Pozzi, C]]