6ich - Revision history

OCA at 09:37, 22 November 2023

2023-11-22T09:37:00Z

←Older revision		Revision as of 09:37, 22 November 2023
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	<StructureSection load='6ich' size='340' side='right'caption='[[6ich]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='6ich' size='340' side='right'caption='[[6ich]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6ich]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ICH OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6ICH FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6ich]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ICH OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ICH FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6ich FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ich OCA], [~~http~~://pdbe.org/6ich PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6ich RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6ich PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6ich ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ich FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ich OCA], [https://pdbe.org/6ich PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ich RCSB], [https://www.ebi.ac.uk/pdbsum/6ich PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ich ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/GRB2_HUMAN GRB2_HUMAN]] Adapter protein that provides a critical link between cell surface growth factor receptors and the Ras signaling pathway.<ref>PMID:1322798</ref> <ref>PMID:8178156</ref> <ref>PMID:19815557</ref> Isoform 2 does not bind to phosphorylated epidermal growth factor receptor (EGFR) but inhibits EGF-induced transactivation of a RAS-responsive element. Isoform 2 acts as a dominant negative protein over GRB2 and by suppressing proliferative signals, may trigger active programmed cell death.<ref>PMID:1322798</ref> <ref>PMID:8178156</ref> <ref>PMID:19815557</ref>	+	[https://www.uniprot.org/uniprot/GRB2_HUMAN GRB2_HUMAN] Adapter protein that provides a critical link between cell surface growth factor receptors and the Ras signaling pathway.<ref>PMID:1322798</ref> <ref>PMID:8178156</ref> <ref>PMID:19815557</ref> Isoform 2 does not bind to phosphorylated epidermal growth factor receptor (EGFR) but inhibits EGF-induced transactivation of a RAS-responsive element. Isoform 2 acts as a dominant negative protein over GRB2 and by suppressing proliferative signals, may trigger active programmed cell death.<ref>PMID:1322798</ref> <ref>PMID:8178156</ref> <ref>PMID:19815557</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6ich" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6ich" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Growth factor receptor-bound proteins 3D structures\|Growth factor receptor-bound proteins 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Abe, R]]	+	[[Category: Abe R]]
-	[[Category: Hosoe, Y]]	+	[[Category: Hosoe Y]]
-	[[Category: Inaba, S]]	+	[[Category: Inaba S]]
-	[[Category: Ito, N]]	+	[[Category: Ito N]]
-	[[Category: Morii, H]]	+	[[Category: Morii H]]
-	[[Category: Numoto, N]]	+	[[Category: Numoto N]]
-	[[Category: Oda, M]]	+	[[Category: Oda M]]
-	[[Category: Ogawa, S]]	+	[[Category: Ogawa S]]
-	~~[[Category: Adapter protein]]~~	+
-	~~[[Category: Phosphorylated tyrosine]]~~	+
-	~~[[Category: Signaling protein]]~~	+
-	~~[[Category: Src homology 2 domain~~]]	+

OCA at 10:39, 17 July 2019

2019-07-17T10:39:08Z

←Older revision		Revision as of 10:39, 17 July 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6ich is ~~ON HOLD~~ ~~until Paper~~ Publication	+	==Grb2 SH2 domain in domain swapped dimer form==
		+	<StructureSection load='6ich' size='340' side='right'caption='[[6ich]], [[Resolution\|resolution]] 2.00Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6ich]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ICH OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ICH FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ich FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ich OCA], [http://pdbe.org/6ich PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ich RCSB], [http://www.ebi.ac.uk/pdbsum/6ich PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ich ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/GRB2_HUMAN GRB2_HUMAN]] Adapter protein that provides a critical link between cell surface growth factor receptors and the Ras signaling pathway.<ref>PMID:1322798</ref> <ref>PMID:8178156</ref> <ref>PMID:19815557</ref> Isoform 2 does not bind to phosphorylated epidermal growth factor receptor (EGFR) but inhibits EGF-induced transactivation of a RAS-responsive element. Isoform 2 acts as a dominant negative protein over GRB2 and by suppressing proliferative signals, may trigger active programmed cell death.<ref>PMID:1322798</ref> <ref>PMID:8178156</ref> <ref>PMID:19815557</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Growth factor receptor-bound protein 2 (Grb2) is an adaptor protein that plays a critical role in cellular signal transduction. It contains a central Src homology 2 (SH2) domain flanked by two Src homology 3 (SH3) domains. Binding of Grb2 SH2 to the cytoplasmic region of CD28, phosphorylated Tyr (pY) containing the peptide motif pY-X-N-X, is required for costimulatory signaling in T cells. In this study, we purified the dimer and monomer forms of Grb2 SH2, respectively, and analyzed their structural and functional properties. Size exclusion chromatography analysis showed that both dimer and monomer exist as stable states. Thermal stability analysis using circular dichroism showed that the dimer mostly dissociates into the monomer around 50 degrees C. CD28 binding experiments showed that the affinity of the dimer to the phosphopeptide was about three fold higher than that of the monomer, possibly due to the avidity effect. The present crystal structure analysis of Grb2 SH2 showed two forms; one is monomer at 1.15 A resolution, which is currently the highest resolution analysis, and another is dimer at 2.00 A resolution. In the dimer structure, the C-terminal region, comprising residues 123-152, was extended towards the adjacent molecule, in which Trp121 was the hinge residue. The stable dimer purified using size exclusion chromatography would be due to the C-terminal helix "swapping". In cases where a mutation caused Trp121 to be replaced by Ser in Grb2 SH2, this protein still formed dimers, but lost the ability to bind CD28.

-	~~Authors:~~ Hosoe, Y., Numoto, N., Inaba, S., Ogawa, S., Morii, H., Abe, R., Ito, N., Oda, M.	+	Structural and functional properties of Grb2 SH2 dimer in CD28 binding.,Hosoe Y, Numoto N, Inaba S, Ogawa S, Morii H, Abe R, Ito N, Oda M Biophys Physicobiol. 2019 Feb 22;16:80-88. doi: 10.2142/biophysico.16.0_80., eCollection 2019. PMID:30923665<ref>PMID:30923665</ref>

-	~~Description~~: ~~Grb2 SH2 domain in domain swapped dimer form~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6ich" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Abe, R]]
	[[Category: Hosoe, Y]]		[[Category: Hosoe, Y]]
	[[Category: Inaba, S]]		[[Category: Inaba, S]]
		+	[[Category: Ito, N]]
		+	[[Category: Morii, H]]
	[[Category: Numoto, N]]		[[Category: Numoto, N]]
	[[Category: Oda, M]]		[[Category: Oda, M]]
-	[[Category: Morii, H]]
	[[Category: Ogawa, S]]		[[Category: Ogawa, S]]
-	[[Category: ~~Ito, N~~]]	+	[[Category: Adapter protein]]
-	[[Category: ~~Abe, R~~]]	+	[[Category: Phosphorylated tyrosine]]
		+	[[Category: Signaling protein]]
		+	[[Category: Src homology 2 domain]]

OCA at 18:16, 19 September 2018

2018-09-19T18:16:37Z

←Older revision		Revision as of 18:16, 19 September 2018
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	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6ich is ON HOLD	+	The entry 6ich is ON HOLD until Paper Publication

	Authors: Hosoe, Y., Numoto, N., Inaba, S., Ogawa, S., Morii, H., Abe, R., Ito, N., Oda, M.		Authors: Hosoe, Y., Numoto, N., Inaba, S., Ogawa, S., Morii, H., Abe, R., Ito, N., Oda, M.

OCA: Protected "6ich" [edit=sysop:move=sysop]

2018-09-12T06:08:45Z

Protected "6ich" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:08, 12 September 2018

OCA: New page: '''Unreleased structure''' The entry 6ich is ON HOLD Authors: Hosoe, Y., Numoto, N., Inaba, S., Ogawa, S., Morii, H., Abe, R., Ito, N., Oda, M. Description: Grb2 SH2 domain in domain s...

2018-09-12T06:08:44Z

New page: '''Unreleased structure''' The entry 6ich is ON HOLD Authors: Hosoe, Y., Numoto, N., Inaba, S., Ogawa, S., Morii, H., Abe, R., Ito, N., Oda, M. Description: Grb2 SH2 domain in domain s...

New page

'''Unreleased structure'''

The entry 6ich is ON HOLD

Authors: Hosoe, Y., Numoto, N., Inaba, S., Ogawa, S., Morii, H., Abe, R., Ito, N., Oda, M.

Description: Grb2 SH2 domain in domain swapped dimer form
[[Category: Unreleased Structures]]
[[Category: Hosoe, Y]]
[[Category: Inaba, S]]
[[Category: Numoto, N]]
[[Category: Oda, M]]
[[Category: Morii, H]]
[[Category: Ogawa, S]]
[[Category: Ito, N]]
[[Category: Abe, R]]