6in5 - Revision history

OCA at 09:46, 22 November 2023

2023-11-22T09:46:17Z

←Older revision		Revision as of 09:46, 22 November 2023
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	<StructureSection load='6in5' size='340' side='right'caption='[[6in5]], [[Resolution\|resolution]] 2.92Å' scene=''>		<StructureSection load='6in5' size='340' side='right'caption='[[6in5]], [[Resolution\|resolution]] 2.92Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6in5]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IN5 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6IN5 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6in5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified_influenza_virus Unidentified influenza virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IN5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IN5 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.916Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6in5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6in5 OCA], [~~http~~://pdbe.org/6in5 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6in5 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6in5 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6in5 ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6in5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6in5 OCA], [https://pdbe.org/6in5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6in5 RCSB], [https://www.ebi.ac.uk/pdbsum/6in5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6in5 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/A0A059VBQ9_9INFA A0A059VBQ9_9INFA] Binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization either through clathrin-dependent endocytosis or through clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore.[HAMAP-Rule:MF_04072][SAAS:SAAS01039073] Binds to sialic acid-containing receptors on the cell surface, bringing about the attachment of the virus particle to the cell. This attachment induces virion internalization of about two third of the virus particles through clathrin-dependent endocytosis and about one third through a clathrin- and caveolin-independent pathway. Plays a major role in the determination of host range restriction and virulence. Class I viral fusion protein. Responsible for penetration of the virus into the cell cytoplasm by mediating the fusion of the membrane of the endocytosed virus particle with the endosomal membrane. Low pH in endosomes induces an irreversible conformational change in HA2, releasing the fusion hydrophobic peptide. Several trimers are required to form a competent fusion pore.[RuleBase:RU003324]
		+
		+	==See Also==
		+	*[[Hemagglutinin 3D structures\|Hemagglutinin 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Lee, M S~~]]	+	[[Category: Unidentified influenza virus]]
-	[[Category: ~~Lin, T H~~]]	+	[[Category: Lee MS]]
-	[[Category: ~~Liu, J S~~]]	+	[[Category: Lin TH]]
-	[[Category: ~~H5n2]]~~	+	[[Category: Liu JS]]
-	~~[[Category: Influenza virus]]~~	+
-	~~[[Category: Viral protein~~]]	+

OCA at 08:59, 30 October 2019

2019-10-30T08:59:29Z

←Older revision		Revision as of 08:59, 30 October 2019
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-	'''Unreleased structure'''

-	~~The entry 6in5 is ON HOLD until Paper Publication~~	+	==Crystal structure of H5N2 hemagglutinin G228S Q226L mutant with 3SLN from A/chicken/Taiwan/0502/2012==
-		+	<StructureSection load='6in5' size='340' side='right'caption='[[6in5]], [[Resolution\|resolution]] 2.92Å' scene=''>
-	~~Authors: Lin, T.H., Lee, M.S., Liu, J.S.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6in5]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IN5 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IN5 FirstGlance]. <br>
-	~~Description:~~ Crystal structure of H5N2 hemagglutinin G228S Q226L mutant with 3SLN from A/chicken/Taiwan/0502/2012	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6in5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6in5 OCA], [http://pdbe.org/6in5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6in5 RCSB], [http://www.ebi.ac.uk/pdbsum/6in5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6in5 ProSAT]</span></td></tr>
-	[[~~Category~~: ~~Liu~~, J.S]]	+	</table>
-	[[Category: Lee, M.S]]	+	__TOC__
-	[[Category: Lin, T.H]]	+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Lee, M S]]
		+	[[Category: Lin, T H]]
		+	[[Category: Liu, J S]]
		+	[[Category: H5n2]]
		+	[[Category: Influenza virus]]
		+	[[Category: Viral protein]]

OCA at 18:50, 2 December 2018

2018-12-02T18:50:39Z

←Older revision		Revision as of 18:50, 2 December 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6in5 is ON HOLD	+	The entry 6in5 is ON HOLD until Paper Publication

	Authors: Lin, T.H., Lee, M.S., Liu, J.S.		Authors: Lin, T.H., Lee, M.S., Liu, J.S.

-	Description: Crystal structure of H5 hemagglutinin G228S Q226L mutant with ~~6SLN~~ from A/chicken/Taiwan/0502/2012	+	Description: Crystal structure of H5N2 hemagglutinin G228S Q226L mutant with 3SLN from A/chicken/Taiwan/0502/2012
	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Liu, J.S]]		[[Category: Liu, J.S]]
	[[Category: Lee, M.S]]		[[Category: Lee, M.S]]
	[[Category: Lin, T.H]]		[[Category: Lin, T.H]]

OCA: Protected "6in5" [edit=sysop:move=sysop]

2018-10-31T05:23:34Z

Protected "6in5" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:23, 31 October 2018

OCA: New page: '''Unreleased structure''' The entry 6in5 is ON HOLD Authors: Lin, T.H., Lee, M.S., Liu, J.S. Description: Crystal structure of H5 hemagglutinin G228S Q226L mutant with 6SLN from A/chi...

2018-10-31T05:23:33Z

New page: '''Unreleased structure''' The entry 6in5 is ON HOLD Authors: Lin, T.H., Lee, M.S., Liu, J.S. Description: Crystal structure of H5 hemagglutinin G228S Q226L mutant with 6SLN from A/chi...

New page

'''Unreleased structure'''

The entry 6in5 is ON HOLD

Authors: Lin, T.H., Lee, M.S., Liu, J.S.

Description: Crystal structure of H5 hemagglutinin G228S Q226L mutant with 6SLN from A/chicken/Taiwan/0502/2012
[[Category: Unreleased Structures]]
[[Category: Liu, J.S]]
[[Category: Lee, M.S]]
[[Category: Lin, T.H]]