6iuc - Revision history

OCA at 09:53, 22 November 2023

2023-11-22T09:53:12Z

←Older revision		Revision as of 09:53, 22 November 2023
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	<StructureSection load='6iuc' size='340' side='right'caption='[[6iuc]], [[Resolution\|resolution]] 3.40Å' scene=''>		<StructureSection load='6iuc' size='340' side='right'caption='[[6iuc]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6iuc]] is a 6 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Campylobacter_pylori Campylobacter~~ pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IUC OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6IUC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6iuc]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IUC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6IUC FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=ATP:ADENOSINE~~-~~5-TRIPHOSPHATE'>ATP</scene>~~, ~~<scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 3.4Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~HP_1139 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=5~~&id~~=~~85962 Campylobacter pylori])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6iuc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iuc OCA], [~~http~~://pdbe.org/6iuc PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6iuc RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6iuc PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6iuc ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6iuc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iuc OCA], [https://pdbe.org/6iuc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6iuc RCSB], [https://www.ebi.ac.uk/pdbsum/6iuc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6iuc ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/O25759_HELPY O25759_HELPY]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Campylobacter~~ pylori]]	+	[[Category: Helicobacter pylori 26695]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Chu, C H~~]]	+	[[Category: Synthetic construct]]
-	[[Category: ~~Sun, Y J~~]]	+	[[Category: Chu CH]]
-	[[Category: ~~Yen, C Y~~]]	+	[[Category: Sun YJ]]
-	[[Category: ~~Dna binding protein]]~~	+	[[Category: Yen CY]]
-	~~[[Category: Dna binding protein-dna complex]]~~	+
-	~~[[Category: Partition protein~~]]	+

OCA at 12:44, 13 March 2019

2019-03-13T12:44:08Z

←Older revision		Revision as of 12:44, 13 March 2019
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	==Structure of Helicobacter pylori Soj-ATP complex bound to DNA==		==Structure of Helicobacter pylori Soj-ATP complex bound to DNA==
-	<StructureSection load='6iuc' size='340' side='right' caption='[[6iuc]], [[Resolution\|resolution]] 3.40Å' scene=''>	+	<StructureSection load='6iuc' size='340' side='right'caption='[[6iuc]], [[Resolution\|resolution]] 3.40Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6iuc]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IUC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IUC FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6iuc]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Campylobacter_pylori Campylobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IUC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IUC FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">HP_1139 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=85962 Campylobacter pylori])</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6iuc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iuc OCA], [http://pdbe.org/6iuc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6iuc RCSB], [http://www.ebi.ac.uk/pdbsum/6iuc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6iuc ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6iuc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iuc OCA], [http://pdbe.org/6iuc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6iuc RCSB], [http://www.ebi.ac.uk/pdbsum/6iuc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6iuc ProSAT]</span></td></tr>
	</table>		</table>
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Campylobacter pylori]]
		+	[[Category: Large Structures]]
	[[Category: Chu, C H]]		[[Category: Chu, C H]]
	[[Category: Sun, Y J]]		[[Category: Sun, Y J]]

OCA at 09:33, 13 February 2019

2019-02-13T09:33:06Z

←Older revision		Revision as of 09:33, 13 February 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6iuc is ~~ON HOLD until Paper~~ Publication	+	==Structure of Helicobacter pylori Soj-ATP complex bound to DNA==
		+	<StructureSection load='6iuc' size='340' side='right' caption='[[6iuc]], [[Resolution\|resolution]] 3.40Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6iuc]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IUC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IUC FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6iuc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6iuc OCA], [http://pdbe.org/6iuc PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6iuc RCSB], [http://www.ebi.ac.uk/pdbsum/6iuc PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6iuc ProSAT]</span></td></tr>
		+	</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	ParABS, an important DNA partitioning process in chromosome segregation, includes ParA (an ATPase), ParB (a parS binding protein) and parS (a centromere-like DNA). The homologous proteins of ParA and ParB in Helicobacter pylori are HpSoj and HpSpo0J, respectively. We analyzed the ATPase activity of HpSoj and found that it is enhanced by both DNA and HpSpo0J. Crystal structures of HpSoj and its DNA complexes revealed a typical ATPase fold and that it is dimeric. DNA binding by HpSoj is promoted by ATP. The HpSoj-ATP-DNA complex non-specifically binds DNA through a continuous basic binding patch formed by lysine residues, with a single DNA-binding site. This complex exhibits a DNA-binding adept state with an active ATP-bound conformation, whereas the HpSoj-ADP-DNA complex may represent a transient DNA-bound state. Based on structural comparisons, HpSoj exhibits a similar DNA binding surface to the bacterial ParA superfamily, but the archaeal ParA superfamily exhibits distinct non-specific DNA-binding via two DNA-binding sites. We detected the HpSpo0J-HpSoj-DNA complex by electron microscopy and show that this nucleoid-adaptor complex (NAC) is formed through HpSoj and HpSpo0J interaction and parS DNA binding. NAC formation is promoted by HpSoj participation and specific parS DNA facilitation.

-	~~Authors: Chu, C.H~~., Yen, ~~C.Y.~~, ~~Sun~~, Y.J.	+	Crystal structures of HpSoj-DNA complexes and the nucleoid-adaptor complex formation in chromosome segregation.,Chu CH, Yen CY, Chen BW, Lin MG, Wang LH, Tang KZ, Hsiao CD, Sun YJ Nucleic Acids Res. 2018 Dec 14. pii: 5245442. doi: 10.1093/nar/gky1251. PMID:30544248<ref>PMID:30544248</ref>

-	~~Description: Structure~~ of ~~Helicobacter pylori Soj-ATP complex bound to DNA~~	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	~~[[Category~~: ~~Unreleased Structures]]~~	+	</div>
-	[[Category: Chu, C.H]]	+	<div class="pdbe-citations 6iuc" style="background-color:#fffaf0;"></div>
-	[[Category: Sun, Y.J]]	+	== References ==
-	[[Category: Yen, C.Y]]	+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Chu, C H]]
		+	[[Category: Sun, Y J]]
		+	[[Category: Yen, C Y]]
		+	[[Category: Dna binding protein]]
		+	[[Category: Dna binding protein-dna complex]]
		+	[[Category: Partition protein]]

OCA: Protected "6iuc" [edit=sysop:move=sysop]

2018-12-05T05:11:36Z

Protected "6iuc" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:11, 5 December 2018

OCA: New page: '''Unreleased structure''' The entry 6iuc is ON HOLD until Paper Publication Authors: Chu, C.H., Yen, C.Y., Sun, Y.J. Description: Structure of Helicobacter pylori Soj-ATP complex boun...

2018-12-05T05:11:35Z

New page: '''Unreleased structure''' The entry 6iuc is ON HOLD until Paper Publication Authors: Chu, C.H., Yen, C.Y., Sun, Y.J. Description: Structure of Helicobacter pylori Soj-ATP complex boun...

New page

'''Unreleased structure'''

The entry 6iuc is ON HOLD until Paper Publication

Authors: Chu, C.H., Yen, C.Y., Sun, Y.J.

Description: Structure of Helicobacter pylori Soj-ATP complex bound to DNA
[[Category: Unreleased Structures]]
[[Category: Chu, C.H]]
[[Category: Sun, Y.J]]
[[Category: Yen, C.Y]]