6jcn - Revision history

OCA at 10:06, 22 November 2023

2023-11-22T10:06:39Z

←Older revision		Revision as of 10:06, 22 November 2023
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	<StructureSection load='6jcn' size='340' side='right'caption='[[6jcn]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='6jcn' size='340' side='right'caption='[[6jcn]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jcn]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Baker's_yeast Baker's yeast~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCN OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JCN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jcn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JCN FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat"~~><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.998Å</td></tr>
-	~~<tr~~ id~~='gene'><td class~~="~~sblockLbl~~">~~<b>~~[[~~Gene~~\|~~Gene:~~]]~~</b></td><td class="sblockDat">NUS1, YDL193W, D1239 ([http://www~~.~~ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info~~&~~srchmode=5&id=559292 Baker's yeast])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='~~activity~~'><td class="sblockLbl"><b>~~Activity~~:</b></td><td class="sblockDat"><~~span class~~='~~plainlinks~~'>[http://en.wikipedia.org/wiki/Ditrans,polycis-polyprenyl_diphosphate_synthase_((2E,6E)-farnesyl_diphosphate_specific) Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyl diphosphate specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.87 2.5.1.87] </~~span~~></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jcn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jcn OCA], [https://pdbe.org/6jcn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jcn RCSB], [https://www.ebi.ac.uk/pdbsum/6jcn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jcn ProSAT]</span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jcn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jcn OCA], [~~http~~://pdbe.org/6jcn PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jcn RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jcn PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jcn ProSAT]</span></td></tr>	+
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/UPPS_YEAST UPPS_YEAST]] With SRT1 or RER2, forms the dehydrodolichyl diphosphate synthase (DDS) complex, an essential component of the dolichol monophosphate (Dol-P) biosynthetic machinery. Adds multiple copies of isopentenyl pyrophosphate (IPP) to farnesyl pyrophosphate (FPP) to produce dehydrodolichyl diphosphate (Dedol-PP), a precursor of dolichol which is utilized as a sugar carrier in protein glycosylation in the endoplasmic reticulum (ER).<ref>PMID:25066056</ref>	+	[https://www.uniprot.org/uniprot/UPPS_YEAST UPPS_YEAST] With SRT1 or RER2, forms the dehydrodolichyl diphosphate synthase (DDS) complex, an essential component of the dolichol monophosphate (Dol-P) biosynthetic machinery. Adds multiple copies of isopentenyl pyrophosphate (IPP) to farnesyl pyrophosphate (FPP) to produce dehydrodolichyl diphosphate (Dedol-PP), a precursor of dolichol which is utilized as a sugar carrier in protein glycosylation in the endoplasmic reticulum (ER).<ref>PMID:25066056</ref>
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Baker's yeast]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Chen, C C]]	+	[[Category: Saccharomyces cerevisiae S288C]]
-	[[Category: Guo, R T]]	+	[[Category: Chen C-C]]
-	[[Category: Ko, T P]]	+	[[Category: Guo R-T]]
-	[[Category: Liu, W]]	+	[[Category: Ko T-P]]
-	[[Category: Ma, J]]	+	[[Category: Liu W]]
-	~~[[Category: Butterfly]]~~	+	[[Category: Ma J]]
-	~~[[Category: Cis-prenyl transferase]]~~	+
-	~~[[Category: Dehydrodolichyl diphosphate synthesis]]~~	+
-	~~[[Category: Heterodimer]]~~	+
-	~~[[Category: Human ngbr]]~~	+
-	~~[[Category: Rossmann-like fold]]~~	+
-	~~[[Category: Transferase]]~~	+
-	~~[[Category: Yeast rer2~~]]	+

OCA at 06:26, 10 July 2019

2019-07-10T06:26:06Z

←Older revision		Revision as of 06:26, 10 July 2019
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	<StructureSection load='6jcn' size='340' side='right'caption='[[6jcn]], [[Resolution\|resolution]] 2.00Å' scene=''>		<StructureSection load='6jcn' size='340' side='right'caption='[[6jcn]], [[Resolution\|resolution]] 2.00Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jcn]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JCN FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jcn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Baker's_yeast Baker's yeast]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JCN FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">NUS1, YDL193W, D1239 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=559292 Baker's yeast])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ditrans,polycis-polyprenyl_diphosphate_synthase_((2E,6E)-farnesyl_diphosphate_specific) Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyl diphosphate specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.87 2.5.1.87] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ditrans,polycis-polyprenyl_diphosphate_synthase_((2E,6E)-farnesyl_diphosphate_specific) Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyl diphosphate specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.87 2.5.1.87] </span></td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jcn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jcn OCA], [http://pdbe.org/6jcn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jcn RCSB], [http://www.ebi.ac.uk/pdbsum/6jcn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jcn ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jcn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jcn OCA], [http://pdbe.org/6jcn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jcn RCSB], [http://www.ebi.ac.uk/pdbsum/6jcn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jcn ProSAT]</span></td></tr>
Line 23:		Line 24:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Baker's yeast]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Chen, C C]]		[[Category: Chen, C C]]

OCA at 07:28, 26 June 2019

2019-06-26T07:28:39Z

←Older revision		Revision as of 07:28, 26 June 2019
Line 10:		Line 10:
	== Function ==		== Function ==
	[[http://www.uniprot.org/uniprot/UPPS_YEAST UPPS_YEAST]] With SRT1 or RER2, forms the dehydrodolichyl diphosphate synthase (DDS) complex, an essential component of the dolichol monophosphate (Dol-P) biosynthetic machinery. Adds multiple copies of isopentenyl pyrophosphate (IPP) to farnesyl pyrophosphate (FPP) to produce dehydrodolichyl diphosphate (Dedol-PP), a precursor of dolichol which is utilized as a sugar carrier in protein glycosylation in the endoplasmic reticulum (ER).<ref>PMID:25066056</ref>		[[http://www.uniprot.org/uniprot/UPPS_YEAST UPPS_YEAST]] With SRT1 or RER2, forms the dehydrodolichyl diphosphate synthase (DDS) complex, an essential component of the dolichol monophosphate (Dol-P) biosynthetic machinery. Adds multiple copies of isopentenyl pyrophosphate (IPP) to farnesyl pyrophosphate (FPP) to produce dehydrodolichyl diphosphate (Dedol-PP), a precursor of dolichol which is utilized as a sugar carrier in protein glycosylation in the endoplasmic reticulum (ER).<ref>PMID:25066056</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	The polyprenoid glycan carriers are produced by cis-prenyltransferases (cis-PTs), which function as heterodimers in metazoa and fungi or homodimers in bacteria, but both are found in plants, protista and archaea. Heterodimeric cis-PTs comprise catalytic and non-catalytic subunits while homodimeric enzymes contain two catalytic subunits. The non-catalytic subunits of cis-PT shows low sequence similarity to known cis-PTs and their structure information is of great interests. Here we report the crystal structure of Nus1, the non-catalytic subunit of cis-PT from Saccharomyces cerevisiae. We also investigate the heterodimer formation and active site conformation by constructing a homology model of Nus1 and its catalytic subunit. Nus1 does not contain an active site, but its C-terminus may participate in catalysis by interacting with the substrates bound to the catalytic subunit. These results provide important basis for further investigation of heterodimeric cis-PTs.
		+
		+	Structural insights to heterodimeric cis-prenyltransferases through yeast dehydrodolichyl diphosphate synthase subunit Nus1.,Ma J, Ko TP, Yu X, Zhang L, Ma L, Zhai C, Guo RT, Liu W, Li H, Chen CC Biochem Biophys Res Commun. 2019 Jun 6. pii: S0006-291X(19)31031-9. doi:, 10.1016/j.bbrc.2019.05.135. PMID:31178134<ref>PMID:31178134</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6jcn" style="background-color:#fffaf0;"></div>
	== References ==		== References ==
	<references/>		<references/>

OCA at 05:56, 19 June 2019

2019-06-19T05:56:49Z

←Older revision		Revision as of 05:56, 19 June 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6jcn is ~~ON HOLD until Paper Publication~~	+	==Yeast dehydrodolichyl diphosphate synthase complex subunit NUS1==
-		+	<StructureSection load='6jcn' size='340' side='right'caption='[[6jcn]], [[Resolution\|resolution]] 2.00Å' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6jcn]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JCN FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ditrans,polycis-polyprenyl_diphosphate_synthase_((2E,6E)-farnesyl_diphosphate_specific) Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyl diphosphate specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.87 2.5.1.87] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jcn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jcn OCA], [http://pdbe.org/6jcn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jcn RCSB], [http://www.ebi.ac.uk/pdbsum/6jcn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jcn ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/UPPS_YEAST UPPS_YEAST]] With SRT1 or RER2, forms the dehydrodolichyl diphosphate synthase (DDS) complex, an essential component of the dolichol monophosphate (Dol-P) biosynthetic machinery. Adds multiple copies of isopentenyl pyrophosphate (IPP) to farnesyl pyrophosphate (FPP) to produce dehydrodolichyl diphosphate (Dedol-PP), a precursor of dolichol which is utilized as a sugar carrier in protein glycosylation in the endoplasmic reticulum (ER).<ref>PMID:25066056</ref>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Chen, C C]]
		+	[[Category: Guo, R T]]
		+	[[Category: Ko, T P]]
		+	[[Category: Liu, W]]
		+	[[Category: Ma, J]]
		+	[[Category: Butterfly]]
		+	[[Category: Cis-prenyl transferase]]
		+	[[Category: Dehydrodolichyl diphosphate synthesis]]
		+	[[Category: Heterodimer]]
		+	[[Category: Human ngbr]]
		+	[[Category: Rossmann-like fold]]
		+	[[Category: Transferase]]
		+	[[Category: Yeast rer2]]

OCA at 04:57, 21 February 2019

2019-02-21T04:57:52Z

←Older revision		Revision as of 04:57, 21 February 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6jcn is ON HOLD	+	The entry 6jcn is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6jcn" [edit=sysop:move=sysop]

2019-02-13T07:22:56Z

Protected "6jcn" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:22, 13 February 2019

OCA: New page: '''Unreleased structure''' The entry 6jcn is ON HOLD Authors: Description: Category: Unreleased Structures

2019-02-13T07:22:55Z

New page: '''Unreleased structure''' The entry 6jcn is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6jcn is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]