6jcq - Revision history

OCA at 10:37, 27 March 2024

2024-03-27T10:37:36Z

←Older revision		Revision as of 10:37, 27 March 2024
Line 3:		Line 3:
	<SX load='6jcq' size='340' side='right' viewer='molstar' caption='[[6jcq]], [[Resolution\|resolution]] 3.30Å' scene=''>		<SX load='6jcq' size='340' side='right' viewer='molstar' caption='[[6jcq]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jcq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCQ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6JCQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jcq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Adeno-associated_virus_-_1 Adeno-associated virus - 1] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JCQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6jcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jcq OCA], [~~http~~://pdbe.org/6jcq PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jcq RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jcq PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jcq ProSAT]</span></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution\|Resolution]] 3.3Å</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jcq OCA], [https://pdbe.org/6jcq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jcq RCSB], [https://www.ebi.ac.uk/pdbsum/6jcq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jcq ProSAT]</span></td></tr>
	</table>		</table>
-	== Disease ==
-	[[http://www.uniprot.org/uniprot/K319L_HUMAN K319L_HUMAN]] Systemic lupus erythematosus;Limited cutaneous systemic sclerosis.
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/~~K319L_HUMAN K319L_HUMAN~~]~~] Possible role in axon guidance through interaction with RTN4R.<ref>PMID:20697954</ref>~~	+	[https://www.uniprot.org/uniprot/Q9WBP8_9VIRU Q9WBP8_9VIRU]
-	~~<div style="background-color:#fffaf0;">~~	+
-	~~== Publication Abstract from PubMed ==~~	+
-	Adeno-associated virus (AAV) receptor (AAVR) is an essential receptor for the entry of multiple AAV serotypes with divergent rules; however, the mechanism remains unclear. Here, we determine the structures of the AAV1-AAVR and AAV5-AAVR complexes, revealing the molecular details by which PKD1 recognizes AAV5 and PKD2 is solely engaged with AAV1. PKD2 lies on the plateau region of the AAV1 capsid. However, the AAV5-AAVR interface is strikingly different, in which PKD1 is bound at the opposite side of the spike of the AAV5 capsid than the PKD2-interacting region of AAV1. Residues in strands F/G and the CD loop of PKD1 interact directly with AAV5, whereas residues in strands B/C/E and the BC loop of PKD2 make contact with AAV1. These findings further the understanding of the distinct mechanisms by which AAVR recognizes various AAV serotypes and provide an example of a single receptor engaging multiple viral serotypes with divergent rules.	+

-	Divergent engagements between adeno-associated viruses with their cellular receptor AAVR.,Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z Nat Commun. 2019 Aug 21;10(1):3760. doi: 10.1038/s41467-019-11668-x. PMID:31434885<ref>PMID:31434885</ref>	+	==See Also==
-		+	*[[Virus coat proteins 3D structures\|Virus coat proteins 3D structures]]
-	~~From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>~~	+
-	~~</div>~~	+
-	~~<div class="pdbe-citations 6jcq" style="background-color:#fffaf0;"></div>~~	+
-	== ~~References~~ ==	+
-	~~<references/>~~	+
	__TOC__		__TOC__
	</SX>		</SX>
		+	[[Category: Adeno-associated virus - 1]]
		+	[[Category: Homo sapiens]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Lou, Z]]	+	[[Category: Lou Z]]
-	[[Category: Zhang, R]]	+	[[Category: Zhang R]]
-	~~[[Category: Aav1]]~~	+
-	~~[[Category: Aavr]]~~	+
-	~~[[Category: Adeno-associated virus]]~~	+
-	~~[[Category: Receptor]]~~	+
-	~~[[Category: Virus~~]]	+

OCA at 02:05, 11 April 2020

2020-04-11T02:05:32Z

←Older revision		Revision as of 02:05, 11 April 2020
Line 3:		Line 3:
	<SX load='6jcq' size='340' side='right' viewer='molstar' caption='[[6jcq]], [[Resolution\|resolution]] 3.30Å' scene=''>		<SX load='6jcq' size='340' side='right' viewer='molstar' caption='[[6jcq]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jcq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCQ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JCQ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jcq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCQ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6JCQ FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jcq OCA], [http://pdbe.org/6jcq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jcq RCSB], [http://www.ebi.ac.uk/pdbsum/6jcq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jcq ProSAT]</span></td></tr>	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6jcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jcq OCA], [http://pdbe.org/6jcq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jcq RCSB], [http://www.ebi.ac.uk/pdbsum/6jcq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jcq ProSAT]</span></td></tr>
	</table>		</table>
	== Disease ==		== Disease ==

OCA at 22:15, 6 March 2020

2020-03-06T22:15:54Z

←Older revision		Revision as of 22:15, 6 March 2020
Line 1:		Line 1:

	==AAV1 in complex with AAVR==		==AAV1 in complex with AAVR==
-	<~~StructureSection~~ load='6jcq' size='340' side='right'caption='[[6jcq]], [[Resolution\|resolution]] 3.30Å' scene=''>	+	<SX load='6jcq' size='340' side='right' viewer='molstar' caption='[[6jcq]], [[Resolution\|resolution]] 3.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
	<table><tr><td colspan='2'>[[6jcq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JCQ FirstGlance]. <br>		<table><tr><td colspan='2'>[[6jcq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JCQ FirstGlance]. <br>
Line 22:		Line 22:
	<references/>		<references/>
	__TOC__		__TOC__
-	</~~StructureSection~~>	+	</SX>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Lou, Z]]		[[Category: Lou, Z]]

OCA at 06:48, 23 October 2019

2019-10-23T06:48:55Z

←Older revision		Revision as of 06:48, 23 October 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6jcq is ~~ON HOLD~~	+	==AAV1 in complex with AAVR==
		+	<StructureSection load='6jcq' size='340' side='right'caption='[[6jcq]], [[Resolution\|resolution]] 3.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6jcq]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JCQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JCQ FirstGlance]. <br>
		+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jcq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jcq OCA], [http://pdbe.org/6jcq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jcq RCSB], [http://www.ebi.ac.uk/pdbsum/6jcq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jcq ProSAT]</span></td></tr>
		+	</table>
		+	== Disease ==
		+	[[http://www.uniprot.org/uniprot/K319L_HUMAN K319L_HUMAN]] Systemic lupus erythematosus;Limited cutaneous systemic sclerosis.
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/K319L_HUMAN K319L_HUMAN]] Possible role in axon guidance through interaction with RTN4R.<ref>PMID:20697954</ref>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Adeno-associated virus (AAV) receptor (AAVR) is an essential receptor for the entry of multiple AAV serotypes with divergent rules; however, the mechanism remains unclear. Here, we determine the structures of the AAV1-AAVR and AAV5-AAVR complexes, revealing the molecular details by which PKD1 recognizes AAV5 and PKD2 is solely engaged with AAV1. PKD2 lies on the plateau region of the AAV1 capsid. However, the AAV5-AAVR interface is strikingly different, in which PKD1 is bound at the opposite side of the spike of the AAV5 capsid than the PKD2-interacting region of AAV1. Residues in strands F/G and the CD loop of PKD1 interact directly with AAV5, whereas residues in strands B/C/E and the BC loop of PKD2 make contact with AAV1. These findings further the understanding of the distinct mechanisms by which AAVR recognizes various AAV serotypes and provide an example of a single receptor engaging multiple viral serotypes with divergent rules.

-	~~Authors~~:	+	Divergent engagements between adeno-associated viruses with their cellular receptor AAVR.,Zhang R, Xu G, Cao L, Sun Z, He Y, Cui M, Sun Y, Li S, Li H, Qin L, Hu M, Yuan Z, Rao Z, Ding W, Rao Z, Lou Z Nat Commun. 2019 Aug 21;10(1):3760. doi: 10.1038/s41467-019-11668-x. PMID:31434885<ref>PMID:31434885</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6jcq" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Lou, Z]]
		+	[[Category: Zhang, R]]
		+	[[Category: Aav1]]
		+	[[Category: Aavr]]
		+	[[Category: Adeno-associated virus]]
		+	[[Category: Receptor]]
		+	[[Category: Virus]]

OCA: Protected "6jcq" [edit=sysop:move=sysop]

2019-02-13T07:23:07Z

Protected "6jcq" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:23, 13 February 2019

OCA: New page: '''Unreleased structure''' The entry 6jcq is ON HOLD Authors: Description: Category: Unreleased Structures

2019-02-13T07:23:05Z

New page: '''Unreleased structure''' The entry 6jcq is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6jcq is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]