6jee - Revision history

OCA at 10:07, 22 November 2023

2023-11-22T10:07:22Z

←Older revision		Revision as of 10:07, 22 November 2023
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	<StructureSection load='6jee' size='340' side='right'caption='[[6jee]], [[Resolution\|resolution]] 1.30Å' scene=''>		<StructureSection load='6jee' size='340' side='right'caption='[[6jee]], [[Resolution\|resolution]] 1.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jee]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JEE OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JEE FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jee]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Equus_caballus Equus caballus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JEE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JEE FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.3Å</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jee OCA], [~~http~~://pdbe.org/6jee PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jee RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jee PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jee ProSAT]</span></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jee OCA], [https://pdbe.org/6jee PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jee RCSB], [https://www.ebi.ac.uk/pdbsum/6jee PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jee ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[~~[http~~://www.uniprot.org/uniprot/FRIL_HORSE FRIL_HORSE]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).	+	[https://www.uniprot.org/uniprot/FRIL_HORSE FRIL_HORSE] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6jee" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6jee" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ferritin 3D structures\|Ferritin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Equus caballus]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Abe, S]]	+	[[Category: Abe S]]
-	[[Category: Ito, N]]	+	[[Category: Ito N]]
-	[[Category: Lu, C]]	+	[[Category: Lu C]]
-	[[Category: Lu, D]]	+	[[Category: Lu D]]
-	[[Category: Maity, B]]	+	[[Category: Maity B]]
-	[[Category: Ueno, T]]	+	[[Category: Ueno T]]
-	~~[[Category: Metal binding protein~~]]	+

OCA at 15:04, 11 December 2019

2019-12-11T15:04:05Z

←Older revision		Revision as of 15:04, 11 December 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6jee is ~~ON HOLD until Feb 05 2021~~	+	==Crystal structure of apo-L161C/L165C-Fr==
		+	<StructureSection load='6jee' size='340' side='right'caption='[[6jee]], [[Resolution\|resolution]] 1.30Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6jee]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JEE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JEE FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jee FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jee OCA], [http://pdbe.org/6jee PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jee RCSB], [http://www.ebi.ac.uk/pdbsum/6jee PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jee ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FRIL_HORSE FRIL_HORSE]] Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation. Also plays a role in delivery of iron to cells. Mediates iron uptake in capsule cells of the developing kidney (By similarity).
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Spherical protein cages with highly symmetrical structures provide unique environments for the conjugation of metal ions and metal nanoparticles. Ferritin has been widely studied as a template for the coordination of metal ions and metal nanoparticles in fundamental research and applications. However, it remains difficult to design metal coordination sites precisely. In this work, we describe the design and construction of new metal coordination sites by introducing Cys residues at the 4-fold symmetrical hydrophobic channel of apo-ferritin. X-ray crystal structure analyses of the mutants containing Cd(ii) ions show that the four or eight binding sites for Cd(ii) ions are located at the 4-fold symmetrical axis channel of apo-ferritin. It was found that the coordination number and configuration of Cd(ii) ions can be varied by adjusting the positions of the Cys residues at the symmetrical channels of the apo-ferritin cage.

-	~~Authors: Abe~~, S., Ito, N., Maity, B., Lu, C., Lu, D., Ueno, T.	+	Coordination design of cadmium ions at the 4-fold axis channel of the apo-ferritin cage.,Abe S, Ito N, Maity B, Lu C, Lu D, Ueno T Dalton Trans. 2019 Jul 2;48(26):9759-9764. doi: 10.1039/c9dt00609e. PMID:30993287<ref>PMID:30993287</ref>

-	~~Description: Crystal structure~~ of ~~apo-L161C~~/~~L165C~~-Fr	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
-	[[Category: ~~Maity~~, B]]	+	<div class="pdbe-citations 6jee" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Abe, S]]
	[[Category: Ito, N]]		[[Category: Ito, N]]
-	[[Category: Lu, D]]
	[[Category: Lu, C]]		[[Category: Lu, C]]
-	[[Category: ~~Abe~~, S]]	+	[[Category: Lu, D]]
		+	[[Category: Maity, B]]
	[[Category: Ueno, T]]		[[Category: Ueno, T]]
		+	[[Category: Metal binding protein]]

OCA at 13:33, 27 February 2019

2019-02-27T13:33:25Z

←Older revision		Revision as of 13:33, 27 February 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6jee is ON HOLD	+	The entry 6jee is ON HOLD until Feb 05 2021

	Authors: Abe, S., Ito, N., Maity, B., Lu, C., Lu, D., Ueno, T.		Authors: Abe, S., Ito, N., Maity, B., Lu, C., Lu, D., Ueno, T.
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	[[Category: Unreleased Structures]]		[[Category: Unreleased Structures]]
	[[Category: Maity, B]]		[[Category: Maity, B]]
-	[[Category: Abe, S]]
-	[[Category: Ueno, T]]
	[[Category: Ito, N]]		[[Category: Ito, N]]
	[[Category: Lu, D]]		[[Category: Lu, D]]
	[[Category: Lu, C]]		[[Category: Lu, C]]
		+	[[Category: Abe, S]]
		+	[[Category: Ueno, T]]

OCA: Protected "6jee" [edit=sysop:move=sysop]

2019-02-13T07:27:31Z

Protected "6jee" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:27, 13 February 2019

OCA: New page: '''Unreleased structure''' The entry 6jee is ON HOLD Authors: Abe, S., Ito, N., Maity, B., Lu, C., Lu, D., Ueno, T. Description: Crystal structure of apo-L161C/L165C-Fr [[Category: Unr...

2019-02-13T07:27:29Z

New page: '''Unreleased structure''' The entry 6jee is ON HOLD Authors: Abe, S., Ito, N., Maity, B., Lu, C., Lu, D., Ueno, T. Description: Crystal structure of apo-L161C/L165C-Fr [[Category: Unr...

New page

'''Unreleased structure'''

The entry 6jee is ON HOLD

Authors: Abe, S., Ito, N., Maity, B., Lu, C., Lu, D., Ueno, T.

Description: Crystal structure of apo-L161C/L165C-Fr
[[Category: Unreleased Structures]]
[[Category: Maity, B]]
[[Category: Abe, S]]
[[Category: Ueno, T]]
[[Category: Ito, N]]
[[Category: Lu, D]]
[[Category: Lu, C]]