6jo2 - Revision history

OCA at 10:16, 22 November 2023

2023-11-22T10:16:46Z

←Older revision		Revision as of 10:16, 22 November 2023
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	<StructureSection load='6jo2' size='340' side='right'caption='[[6jo2]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='6jo2' size='340' side='right'caption='[[6jo2]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jo2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/~~Theeb Theeb~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JO2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jo2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus_BP-1 Thermosynechococcus vestitus BP-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JO2 FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>~~, ~~<scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.55Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat"><~~div style~~='~~overflow~~: ~~auto; max-height: 3em;~~'>~~[[6iri\|6iri]]~~</~~div~~></td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<~~tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b~~></td>~~<td class="sblockDat">petF1, petF, tsl1009 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197221 THEEB])~~</td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jo2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jo2 OCA], [https://pdbe.org/6jo2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jo2 RCSB], [https://www.ebi.ac.uk/pdbsum/6jo2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jo2 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jo2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jo2 OCA], [https://pdbe.org/6jo2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jo2 RCSB], [https://www.ebi.ac.uk/pdbsum/6jo2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jo2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[https://www.uniprot.org/uniprot/~~FER_THEEB FER_THEEB]~~] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	+	[https://www.uniprot.org/uniprot/FER_THEVB FER_THEVB] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Theeb~~]]	+	[[Category: Thermosynechococcus vestitus BP-1]]
-	[[Category: Motomura, T]]	+	[[Category: Motomura T]]
-	~~[[Category: Electron transport]]~~	+
-	~~[[Category: Photosynthesis~~]]	+

OCA at 06:13, 18 August 2021

2021-08-18T06:13:23Z

←Older revision		Revision as of 06:13, 18 August 2021
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	<StructureSection load='6jo2' size='340' side='right'caption='[[6jo2]], [[Resolution\|resolution]] 1.55Å' scene=''>		<StructureSection load='6jo2' size='340' side='right'caption='[[6jo2]], [[Resolution\|resolution]] 1.55Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6jo2]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Theeb Theeb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JO2 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6JO2 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6jo2]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Theeb Theeb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JO2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6JO2 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=~~BAM~~:BENZAMIDINE'>~~BAM~~</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEN:BENZAMIDINE'>BEN</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6iri\|6iri]]</td></tr>	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[6iri\|6iri]]</div></td></tr>
-	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">petF1, petF, tsl1009 ([~~http~~://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197221 THEEB])</td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">petF1, petF, tsl1009 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197221 THEEB])</td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6jo2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jo2 OCA], [~~http~~://pdbe.org/6jo2 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6jo2 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6jo2 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6jo2 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6jo2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jo2 OCA], [https://pdbe.org/6jo2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6jo2 RCSB], [https://www.ebi.ac.uk/pdbsum/6jo2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6jo2 ProSAT]</span></td></tr>
	</table>		</table>
	== Function ==		== Function ==
-	[[~~http~~://www.uniprot.org/uniprot/FER_THEEB FER_THEEB]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	+	[[https://www.uniprot.org/uniprot/FER_THEEB FER_THEEB]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6jo2" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6jo2" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Ferredoxin 3D structures\|Ferredoxin 3D structures]]
	== References ==		== References ==
	<references/>		<references/>

OCA at 18:34, 11 December 2019

2019-12-11T18:34:49Z

←Older revision		Revision as of 18:34, 11 December 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6jo2 is ~~ON HOLD until Mar 19 2021~~	+	==Ferredoxin I from Thermosynechococcus elongatus==
		+	<StructureSection load='6jo2' size='340' side='right'caption='[[6jo2]], [[Resolution\|resolution]] 1.55Å' scene=''>
		+	== Structural highlights ==
		+	<table><tr><td colspan='2'>[[6jo2]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Theeb Theeb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6JO2 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6JO2 FirstGlance]. <br>
		+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BAM:BENZAMIDINE'>BAM</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
		+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6iri\|6iri]]</td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">petF1, petF, tsl1009 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197221 THEEB])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6jo2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6jo2 OCA], [http://pdbe.org/6jo2 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6jo2 RCSB], [http://www.ebi.ac.uk/pdbsum/6jo2 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6jo2 ProSAT]</span></td></tr>
		+	</table>
		+	== Function ==
		+	[[http://www.uniprot.org/uniprot/FER_THEEB FER_THEEB]] Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Photosynthetic [2Fe-2S] plant-type ferredoxins have a central role in electron transfer between the photosynthetic chain and various metabolic pathways. Several genes are coding for [2Fe2S] ferredoxins in cyanobacteria, with four in the thermophilic cyanobacterium Thermosynechococcus elongatus. The structure and functional properties of the major ferredoxin Fd1 are well known but data on the other ferredoxins are scarce. We report the structural and functional properties of a novel minor type ferredoxin, Fd2 of T. elongatus, homologous to Fed4 from Synechocystis sp. PCC 6803. Remarkably, the midpoint potential of Fd2, Em=-440mV, is lower than that of Fd1, Em=-372mV. However, while Fd2 can efficiently react with photosystem I or nitrite reductase, time-resolved spectroscopy shows that Fd2 has a very low capacity to reduce ferredoxin-NADP(+) oxidoreductase (FNR). These unique Fd2 properties are discussed in relation with its structure, solved at 1.38A resolution. The Fd2 structure significantly differs from other known ferredoxins structures in loop 2, N-terminal region, hydrogen bonding networks and surface charge distributions. UV-Vis, EPR, and Mid- and Far-IR data also show that the electronic properties of the [2Fe2S] cluster of Fd2 and its interaction with the protein differ from those of Fd1 both in the oxidized and reduced states. The structural analysis allows to propose that valine in the motif Cys53ValAsnCys56 of Fd2 and the specific orientation of Phe72, explain the electron transfer properties of Fd2. Strikingly, the nature of these residues correlates with different phylogenetic groups of cyanobacterial Fds. With its low redox potential and its discrimination against FNR, Fd2 exhibits a unique capacity to direct efficiently photosynthetic electrons to metabolic pathways not dependent on FNR.

-	~~Authors~~:	+	An alternative plant-like cyanobacterial ferredoxin with unprecedented structural and functional properties.,Motomura T, Zuccarello L, Setif P, Boussac A, Umena Y, Lemaire D, Tripathy JN, Sugiura M, Hienerwadel R, Shen JR, Berthomieu C Biochim Biophys Acta Bioenerg. 2019 Nov 1;1860(11):148084. doi:, 10.1016/j.bbabio.2019.148084. Epub 2019 Sep 12. PMID:31520614<ref>PMID:31520614</ref>

-	~~Description~~:	+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
-	[[Category: ~~Unreleased~~ Structures]]	+	</div>
		+	<div class="pdbe-citations 6jo2" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Theeb]]
		+	[[Category: Motomura, T]]
		+	[[Category: Electron transport]]
		+	[[Category: Photosynthesis]]

OCA at 06:53, 1 May 2019

2019-05-01T06:53:29Z

←Older revision		Revision as of 06:53, 1 May 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6jo2 is ON HOLD	+	The entry 6jo2 is ON HOLD until Mar 19 2021

	Authors:		Authors:

OCA: Protected "6jo2" [edit=sysop:move=sysop]

2019-04-10T05:19:49Z

Protected "6jo2" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:19, 10 April 2019

OCA: New page: '''Unreleased structure''' The entry 6jo2 is ON HOLD Authors: Description: Category: Unreleased Structures

2019-04-10T05:19:48Z

New page: '''Unreleased structure''' The entry 6jo2 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6jo2 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]