6m31 - Revision history

OCA at 19:28, 29 May 2024

2024-05-29T19:28:21Z

←Older revision		Revision as of 19:28, 29 May 2024
Line 1:		Line 1:

-	==Structural and ~~Functional Insights~~ into an Archaeal ~~Lipid Synthase~~==	+	==Structural and functional insights into an Archaeal synthase==
	<StructureSection load='6m31' size='340' side='right'caption='[[6m31]], [[Resolution\|resolution]] 2.30Å' scene=''>		<StructureSection load='6m31' size='340' side='right'caption='[[6m31]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>~~[[6m31]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Metja Metja].~~ Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M31 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M31 FirstGlance]. <br>	+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M31 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M31 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPG:[(Z)-OCTADEC-9-ENYL]+(2R)-2,3-BIS(OXIDANYL)PROPANOATE'>MPG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene~~></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.3Å</td></tr>
-	~~<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MJ0279 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPG:[(Z)-OCTADEC-9-ENYL]+(2R)-2,3-BIS(OXIDANYL)PROPANOATE'>MPG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Geranylgeranylglycerol-phosphate_geranylgeranyltransferase Geranylgeranylglycerol-phosphate geranylgeranyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.42 2.5.1.42] </span></td></tr>	+
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m31 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m31 OCA], [https://pdbe.org/6m31 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m31 RCSB], [https://www.ebi.ac.uk/pdbsum/6m31 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m31 ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m31 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m31 OCA], [https://pdbe.org/6m31 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m31 RCSB], [https://www.ebi.ac.uk/pdbsum/6m31 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m31 ProSAT]</span></td></tr>
	</table>		</table>
-	== Function ==
-	[[https://www.uniprot.org/uniprot/DGGGP_METJA DGGGP_METJA]] Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: Geranylgeranylglycerol-phosphate geranylgeranyltransferase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Metja~~]]	+	[[Category: Sixue R]]
-	[[Category: ~~Cheng, W]]~~	+	[[Category: Wei C]]
-	~~[[Category: Ren, S]]~~	+
-	~~[[Category: Lipid]]~~	+
-	~~[[Category: Membrane protein~~]]	+

OCA at 06:29, 18 August 2022

2022-08-18T06:29:11Z

←Older revision		Revision as of 06:29, 18 August 2022
Line 16:		Line 16:
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Metja]]		[[Category: Metja]]
-	[[Category: ~~Sixue~~, R]]	+	[[Category: Cheng, W]]
-	[[Category: ~~Wei~~, C]]	+	[[Category: Ren, S]]
	[[Category: Lipid]]		[[Category: Lipid]]
	[[Category: Membrane protein]]		[[Category: Membrane protein]]

OCA at 06:13, 18 August 2021

2021-08-18T06:13:46Z

←Older revision		Revision as of 06:13, 18 August 2021
Line 1:		Line 1:

-	==Structural and ~~functional insights~~ into an Archaeal ~~synthase~~==	+	==Structural and Functional Insights into an Archaeal Lipid Synthase==
-	<StructureSection load='6m31' size='340' side='right'caption='[[6m31]]' scene=''>	+	<StructureSection load='6m31' size='340' side='right'caption='[[6m31]], [[Resolution\|resolution]] 2.30Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M31 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M31 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6m31]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Metja Metja]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M31 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M31 FirstGlance]. <br>
-	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m31 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m31 OCA], [https://pdbe.org/6m31 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m31 RCSB], [https://www.ebi.ac.uk/pdbsum/6m31 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m31 ProSAT]</span></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LDA:LAURYL+DIMETHYLAMINE-N-OXIDE'>LDA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPG:[(Z)-OCTADEC-9-ENYL]+(2R)-2,3-BIS(OXIDANYL)PROPANOATE'>MPG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">MJ0279 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr>
		+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Geranylgeranylglycerol-phosphate_geranylgeranyltransferase Geranylgeranylglycerol-phosphate geranylgeranyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.42 2.5.1.42] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m31 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m31 OCA], [https://pdbe.org/6m31 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m31 RCSB], [https://www.ebi.ac.uk/pdbsum/6m31 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m31 ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[[https://www.uniprot.org/uniprot/DGGGP_METJA DGGGP_METJA]] Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Geranylgeranylglycerol-phosphate geranylgeranyltransferase]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: Sixue R]]	+	[[Category: Metja]]
-	[[Category: Wei C]]	+	[[Category: Sixue, R]]
		+	[[Category: Wei, C]]
		+	[[Category: Lipid]]
		+	[[Category: Membrane protein]]

OCA at 11:05, 3 February 2021

2021-02-03T11:05:13Z

←Older revision		Revision as of 11:05, 3 February 2021
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry~~ 6m31 ~~is ON HOLD until Paper Publication~~	+	==Structural and functional insights into an Archaeal synthase==
-		+	<StructureSection load='6m31' size='340' side='right'caption='[[6m31]]' scene=''>
-	~~Authors~~:	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6M31 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6M31 FirstGlance]. <br>
-	~~Description~~:	+	</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6m31 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6m31 OCA], [https://pdbe.org/6m31 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6m31 RCSB], [https://www.ebi.ac.uk/pdbsum/6m31 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6m31 ProSAT]</span></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Sixue R]]
		+	[[Category: Wei C]]

OCA at 04:35, 27 May 2020

2020-05-27T04:35:25Z

←Older revision		Revision as of 04:35, 27 May 2020
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6m31 is ON HOLD	+	The entry 6m31 is ON HOLD until Paper Publication

	Authors:		Authors:

OCA: Protected "6m31" [edit=sysop:move=sysop]

2020-03-11T05:58:06Z

Protected "6m31" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:58, 11 March 2020

OCA: New page: '''Unreleased structure''' The entry 6m31 is ON HOLD Authors: Description: Category: Unreleased Structures

2020-03-11T05:58:04Z

New page: '''Unreleased structure''' The entry 6m31 is ON HOLD Authors: Description: Category: Unreleased Structures

New page

'''Unreleased structure'''

The entry 6m31 is ON HOLD

Authors:

Description:
[[Category: Unreleased Structures]]