6mvj - Revision history

OCA at 06:39, 11 October 2023

2023-10-11T06:39:37Z

←Older revision		Revision as of 06:39, 11 October 2023
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	<StructureSection load='6mvj' size='340' side='right'caption='[[6mvj]], [[Resolution\|resolution]] 1.81Å' scene=''>		<StructureSection load='6mvj' size='340' side='right'caption='[[6mvj]], [[Resolution\|resolution]] 1.81Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6mvj]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Neucr Neucr~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MVJ OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6MVJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6mvj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Neurospora_crassa_OR74A Neurospora crassa OR74A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MVJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6MVJ FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat" id="~~ligandDat~~">~~<scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 1.809Å</td></tr>
-	<tr id='~~gene~~'><td class="sblockLbl"><b>[[~~Gene~~\|~~Gene~~:]]</b></td><td class="sblockDat">~~gh45-1, NCU05121 ([http~~:/~~/www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode~~=~~Info&srchmode~~=~~5&id=367110 NEUCR])~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=PRD_900005:beta-cellobiose'>PRD_900005</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6mvj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mvj OCA], [~~http~~://pdbe.org/6mvj PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6mvj RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6mvj PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6mvj ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6mvj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mvj OCA], [https://pdbe.org/6mvj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6mvj RCSB], [https://www.ebi.ac.uk/pdbsum/6mvj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6mvj ProSAT]</span></td></tr>
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/Q1K5M0_NEUCR Q1K5M0_NEUCR]
	<div style="background-color:#fffaf0;">		<div style="background-color:#fffaf0;">
	== Publication Abstract from PubMed ==		== Publication Abstract from PubMed ==
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	</div>		</div>
	<div class="pdbe-citations 6mvj" style="background-color:#fffaf0;"></div>		<div class="pdbe-citations 6mvj" style="background-color:#fffaf0;"></div>
		+
		+	==See Also==
		+	*[[Glucanase 3D structures\|Glucanase 3D structures]]
	== References ==		== References ==
	<references/>		<references/>
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	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	[[Category: ~~Neucr~~]]	+	[[Category: Neurospora crassa OR74A]]
-	[[Category: Kadowaki~~, M A.S~~]]	+	[[Category: Kadowaki MAS]]
-	[[Category: Polikarpov, I]]	+	[[Category: Polikarpov I]]
-	~~[[Category: Endoglucanase v glycoside hydrolase 45 family a cellobiose complex]]~~	+
-	~~[[Category: Hydrolase~~]]	+

OCA at 05:47, 13 May 2020

2020-05-13T05:47:21Z

←Older revision		Revision as of 05:47, 13 May 2020
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	<StructureSection load='6mvj' size='340' side='right'caption='[[6mvj]], [[Resolution\|resolution]] 1.81Å' scene=''>		<StructureSection load='6mvj' size='340' side='right'caption='[[6mvj]], [[Resolution\|resolution]] 1.81Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6mvj]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MVJ OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6MVJ FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6mvj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Neucr Neucr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MVJ OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6MVJ FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6mvj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mvj OCA], [http://pdbe.org/6mvj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6mvj RCSB], [http://www.ebi.ac.uk/pdbsum/6mvj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6mvj ProSAT]</span></td></tr>	+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">gh45-1, NCU05121 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=367110 NEUCR])</td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6mvj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mvj OCA], [http://pdbe.org/6mvj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6mvj RCSB], [http://www.ebi.ac.uk/pdbsum/6mvj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6mvj ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Glycoside hydrolase (GH) family 45 is one of the smallest and poorly studied endoglucanase family with a broad biotechnological application ranging from treatment of textiles to conversion of complex cell wall polysaccharides into simple oligo- and monosaccharides. In a present study, GH45 cellulase from Neurospora crassa OR74A (NcCel45A) was characterized both biochemically and structurally. HPLC analysis of the hydrolytic products confirmed the endo-beta(1,4) mode of action of the enzyme. Moreover, such pattern revealed that NcCel45A cannot hydrolyze efficiently oligosaccharides with a degree of polymerization smaller than six. The crystal structure of NcCel45A catalytic domain in the apo-form was determined at 1.9A resolution and the structure of the enzyme bound to cellobiose was solved and refined to 1.8A resolution. Comparative structural analyses and molecular dynamics simulations show that the enzyme dynamics is affected by substrate binding. Taken together, MD simulations and statistical coupling analysis revealed previously unknown correlation of a loop 6 with the breakdown of cellulose substrates by GH45.
		+
		+	Structural insights into the hydrolysis pattern and molecular dynamics simulations of GH45 subfamily a endoglucanase from Neurospora crassa OR74A.,Kadowaki MAS, Polikarpov I Biochimie. 2019 Oct;165:275-284. doi: 10.1016/j.biochi.2019.08.016. Epub 2019 Aug, 28. PMID:31472178<ref>PMID:31472178</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6mvj" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Neucr]]
	[[Category: Kadowaki, M A.S]]		[[Category: Kadowaki, M A.S]]
	[[Category: Polikarpov, I]]		[[Category: Polikarpov, I]]
	[[Category: Endoglucanase v glycoside hydrolase 45 family a cellobiose complex]]		[[Category: Endoglucanase v glycoside hydrolase 45 family a cellobiose complex]]
	[[Category: Hydrolase]]		[[Category: Hydrolase]]

OCA at 09:06, 30 October 2019

2019-10-30T09:06:01Z

←Older revision		Revision as of 09:06, 30 October 2019
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-	'''Unreleased structure'''

-	~~The entry~~ 6mvj is ~~ON HOLD until Paper Publication~~	+	==Cellobiose complex Cel45A from Neurospora crassa OR74A==
-		+	<StructureSection load='6mvj' size='340' side='right'caption='[[6mvj]], [[Resolution\|resolution]] 1.81Å' scene=''>
-	~~Authors~~: ~~Kadowaki~~, M.A.S., ~~Polikarpov~~, I.	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6mvj]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MVJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6MVJ FirstGlance]. <br>
-	~~Description: Cellobiose complex Cel45A from Neurospora crassa OR74A~~	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6mvj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6mvj OCA], [http://pdbe.org/6mvj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6mvj RCSB], [http://www.ebi.ac.uk/pdbsum/6mvj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6mvj ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Kadowaki, M A.S]]
	[[Category: Polikarpov, I]]		[[Category: Polikarpov, I]]
-	[[Category: ~~Kadowaki, M.A.S~~]]	+	[[Category: Endoglucanase v glycoside hydrolase 45 family a cellobiose complex]]
		+	[[Category: Hydrolase]]

OCA at 19:01, 2 December 2018

2018-12-02T19:01:20Z

←Older revision		Revision as of 19:01, 2 December 2018
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6mvj is ON HOLD	+	The entry 6mvj is ON HOLD until Paper Publication

	Authors: Kadowaki, M.A.S., Polikarpov, I.		Authors: Kadowaki, M.A.S., Polikarpov, I.

OCA: Protected "6mvj" [edit=sysop:move=sysop]

2018-10-31T05:36:40Z

Protected "6mvj" [edit=sysop:move=sysop]

←Older revision

Revision as of 05:36, 31 October 2018

OCA: New page: '''Unreleased structure''' The entry 6mvj is ON HOLD Authors: Kadowaki, M.A.S., Polikarpov, I. Description: Cellobiose complex Cel45A from Neurospora crassa OR74A [[Category: Unrelease...

2018-10-31T05:36:39Z

New page: '''Unreleased structure''' The entry 6mvj is ON HOLD Authors: Kadowaki, M.A.S., Polikarpov, I. Description: Cellobiose complex Cel45A from Neurospora crassa OR74A [[Category: Unrelease...

New page

'''Unreleased structure'''

The entry 6mvj is ON HOLD

Authors: Kadowaki, M.A.S., Polikarpov, I.

Description: Cellobiose complex Cel45A from Neurospora crassa OR74A
[[Category: Unreleased Structures]]
[[Category: Polikarpov, I]]
[[Category: Kadowaki, M.A.S]]