6nbr - Revision history

OCA at 14:47, 13 March 2024

2024-03-13T14:47:09Z

←Older revision		Revision as of 14:47, 13 March 2024
Line 3:		Line 3:
	<StructureSection load='6nbr' size='340' side='right'caption='[[6nbr]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='6nbr' size='340' side='right'caption='[[6nbr]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6nbr]] is a 4 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Piper_methysticum Piper methysticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NBR OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6NBR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6nbr]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Piper_methysticum Piper methysticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NBR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NBR FirstGlance]. <br>
-	</td></tr><tr id='~~ligand~~'><td class="sblockLbl"><b>[[~~Ligand~~\|~~Ligands~~:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=NAP:NADP+NICOTINAMIDE~~-~~ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene>~~</td></tr>	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.8Å</td></tr>
-	<tr id='~~related~~'><td class="sblockLbl"><b>[[~~Related_structure~~\|~~Related~~:]]</b></td><td class="sblockDat">~~[[6cqb\|6cqb]], [[6op5\|6op5]]~~</td></tr>	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6nbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nbr OCA], [~~http~~://pdbe.org/6nbr PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6nbr RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6nbr PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6nbr ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nbr OCA], [https://pdbe.org/6nbr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nbr RCSB], [https://www.ebi.ac.uk/pdbsum/6nbr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nbr ProSAT]</span></td></tr>
	</table>		</table>
-	~~<div style~~=~~"background-color:#fffaf0;">~~	+	== Function ==
-	=~~= Publication Abstract from PubMed~~ ==	+	[https://www.uniprot.org/uniprot/A0A4Y5QR90_9MAGN A0A4Y5QR90_9MAGN]
-	Kava (Piper methysticum) is an ethnomedicinal shrub native to the Polynesian islands with well-established anxiolytic and analgesic properties. Its main psychoactive principles, kavalactones, form a unique class of polyketides that interact with the human central nervous system through mechanisms distinct from those of conventional psychiatric drugs. However, an unknown biosynthetic machinery and difficulty in chemical synthesis hinder the therapeutic use of kavalactones. In addition, kava also produces flavokavains, which are chalconoids with anticancer properties structurally related to kavalactones. Here, we report de novo elucidation of the key enzymes of the kavalactone and flavokavain biosynthetic network. We present the structural basis for the evolutionary development of a pair of paralogous styrylpyrone synthases that establish the kavalactone scaffold and the catalytic mechanism of a regio- and stereo-specific kavalactone reductase that produces a subset of chiral kavalactones. We further demonstrate the feasibility of engineering styrylpyrone production in heterologous hosts, thus opening a way to develop kavalactone-based non-addictive psychiatric therapeutics through synthetic biology.	+
-		+
-	~~The biosynthetic origin of psychoactive kavalactones in kava.,Pluskal T, Torrens-Spence MP, Fallon TR, De Abreu A, Shi CH, Weng JK Nat Plants. 2019 Jul 22. pii~~: ~~10.1038~~/~~s41477-019-0474-0. doi:, 10.1038~~/~~s41477-019-0474-0~~. ~~PMID:31332312<ref>PMID:31332312</ref>~~	+
-		+
-	~~From MEDLINE®/PubMed®, a database of the U~~.~~S. National Library of Medicine.<br>~~	+
-	</~~div>~~	+
-	~~<div class="pdbe-citations 6nbr" style="background-color:#fffaf0;"></div>~~	+
-	~~== References ==~~	+
-	~~<references~~/>	+
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Piper methysticum]]		[[Category: Piper methysticum]]
-	[[Category: Pluskal, T]]	+	[[Category: Pluskal T]]
-	[[Category: Weng~~, J K]]~~	+	[[Category: Weng JK]]
-	~~[[Category: Kavalactone biosynthesis]]~~	+
-	~~[[Category: Phenylpropanoid pathway]]~~	+
-	~~[[Category: Transferase~~]]	+

OCA at 06:19, 7 August 2019

2019-08-07T06:19:13Z

←Older revision		Revision as of 06:19, 7 August 2019
Line 3:		Line 3:
	<StructureSection load='6nbr' size='340' side='right'caption='[[6nbr]], [[Resolution\|resolution]] 2.80Å' scene=''>		<StructureSection load='6nbr' size='340' side='right'caption='[[6nbr]], [[Resolution\|resolution]] 2.80Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6nbr]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NBR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NBR FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6nbr]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Piper_methysticum Piper methysticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NBR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NBR FirstGlance]. <br>
	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>		</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6cqb\|6cqb]], [[6op5\|6op5]]</td></tr>		<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6cqb\|6cqb]], [[6op5\|6op5]]</td></tr>
	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nbr OCA], [http://pdbe.org/6nbr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nbr RCSB], [http://www.ebi.ac.uk/pdbsum/6nbr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nbr ProSAT]</span></td></tr>		<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nbr OCA], [http://pdbe.org/6nbr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nbr RCSB], [http://www.ebi.ac.uk/pdbsum/6nbr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nbr ProSAT]</span></td></tr>
	</table>		</table>
		+	<div style="background-color:#fffaf0;">
		+	== Publication Abstract from PubMed ==
		+	Kava (Piper methysticum) is an ethnomedicinal shrub native to the Polynesian islands with well-established anxiolytic and analgesic properties. Its main psychoactive principles, kavalactones, form a unique class of polyketides that interact with the human central nervous system through mechanisms distinct from those of conventional psychiatric drugs. However, an unknown biosynthetic machinery and difficulty in chemical synthesis hinder the therapeutic use of kavalactones. In addition, kava also produces flavokavains, which are chalconoids with anticancer properties structurally related to kavalactones. Here, we report de novo elucidation of the key enzymes of the kavalactone and flavokavain biosynthetic network. We present the structural basis for the evolutionary development of a pair of paralogous styrylpyrone synthases that establish the kavalactone scaffold and the catalytic mechanism of a regio- and stereo-specific kavalactone reductase that produces a subset of chiral kavalactones. We further demonstrate the feasibility of engineering styrylpyrone production in heterologous hosts, thus opening a way to develop kavalactone-based non-addictive psychiatric therapeutics through synthetic biology.
		+
		+	The biosynthetic origin of psychoactive kavalactones in kava.,Pluskal T, Torrens-Spence MP, Fallon TR, De Abreu A, Shi CH, Weng JK Nat Plants. 2019 Jul 22. pii: 10.1038/s41477-019-0474-0. doi:, 10.1038/s41477-019-0474-0. PMID:31332312<ref>PMID:31332312</ref>
		+
		+	From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
		+	</div>
		+	<div class="pdbe-citations 6nbr" style="background-color:#fffaf0;"></div>
		+	== References ==
		+	<references/>
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
	[[Category: Large Structures]]		[[Category: Large Structures]]
		+	[[Category: Piper methysticum]]
	[[Category: Pluskal, T]]		[[Category: Pluskal, T]]
	[[Category: Weng, J K]]		[[Category: Weng, J K]]

OCA at 06:01, 19 June 2019

2019-06-19T06:01:39Z

←Older revision		Revision as of 06:01, 19 June 2019
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 6nbr is ON HOLD~~	+	==Crystal Structure of Piper methysticum Kavalactone Reductase 1 in complex with NADP==
-		+	<StructureSection load='6nbr' size='340' side='right'caption='[[6nbr]], [[Resolution\|resolution]] 2.80Å' scene=''>
-	~~Authors: Pluskal, T., Weng, J.K.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6nbr]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NBR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NBR FirstGlance]. <br>
-	~~Description:~~ Crystal Structure of Piper methysticum Kavalactone Reductase 1 in complex with NADP	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAP:NADP+NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NAP</scene></td></tr>
-	[[~~Category~~: ~~Unreleased Structures~~]]	+	<tr id='related'><td class="sblockLbl"><b>[[Related_structure\|Related:]]</b></td><td class="sblockDat">[[6cqb\|6cqb]], [[6op5\|6op5]]</td></tr>
-	[[~~Category~~: ~~Weng~~, J.K]]	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nbr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nbr OCA], [http://pdbe.org/6nbr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nbr RCSB], [http://www.ebi.ac.uk/pdbsum/6nbr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nbr ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
	[[Category: Pluskal, T]]		[[Category: Pluskal, T]]
		+	[[Category: Weng, J K]]
		+	[[Category: Kavalactone biosynthesis]]
		+	[[Category: Phenylpropanoid pathway]]
		+	[[Category: Transferase]]

OCA: Protected "6nbr" [edit=sysop:move=sysop]

2018-12-19T06:35:04Z

Protected "6nbr" [edit=sysop:move=sysop]

←Older revision

Revision as of 06:35, 19 December 2018

OCA: New page: '''Unreleased structure''' The entry 6nbr is ON HOLD Authors: Pluskal, T., Weng, J.K. Description: Crystal Structure of Piper methysticum Kavalactone Reductase 1 in complex with NADP [...

2018-12-19T06:35:03Z

New page: '''Unreleased structure''' The entry 6nbr is ON HOLD Authors: Pluskal, T., Weng, J.K. Description: Crystal Structure of Piper methysticum Kavalactone Reductase 1 in complex with NADP [...

New page

'''Unreleased structure'''

The entry 6nbr is ON HOLD

Authors: Pluskal, T., Weng, J.K.

Description: Crystal Structure of Piper methysticum Kavalactone Reductase 1 in complex with NADP
[[Category: Unreleased Structures]]
[[Category: Weng, J.K]]
[[Category: Pluskal, T]]