6nv8 - Revision history

OCA at 07:00, 11 October 2023

2023-10-11T07:00:18Z

←Older revision		Revision as of 07:00, 11 October 2023
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	<StructureSection load='6nv8' size='340' side='right'caption='[[6nv8]], [[Resolution\|resolution]] 2.26Å' scene=''>		<StructureSection load='6nv8' size='340' side='right'caption='[[6nv8]], [[Resolution\|resolution]] 2.26Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6nv8]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~"bacterium_freundii"_braak_1928 "bacterium~~ freundii~~" braak 1928~~]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NV8 OCA]. For a <b>guided tour on the structure components</b> use [~~http~~://proteopedia.org/fgij/fg.htm?mol=6NV8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6nv8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Citrobacter_freundii Citrobacter freundii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NV8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6NV8 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0JO:2-{[(E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE]AMINO}PROP-2-ENOIC+ACID'>0JO</scene>, <scene name='pdbligand=CQG:pyridin-4-ol'>CQG</scene>, <scene name='pdbligand=DHA:2-AMINO-ACRYLIC+ACID'>DHA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, ~~<scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene></td></tr>~~	+	</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models\|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution\|Resolution]] 2.26Å</td></tr>
-	~~<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat">~~<scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene><~~/td></tr>~~	+	<tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0JO:2-{[(E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE]AMINO}PROP-2-ENOIC+ACID'>0JO</scene>, <scene name='pdbligand=CQG:pyridin-4-ol'>CQG</scene>, <scene name='pdbligand=DHA:2-AMINO-ACRYLIC+ACID'>DHA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene></td></tr>
-	~~<tr id~~='~~gene'><td class~~=~~"sblockLbl"><b>[[Gene\|Gene~~:~~]]</b></td><td class="sblockDat">tpl ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=546 "Bacterium freundii" Braak 1928])</td></tr>~~	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6nv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nv8 OCA], [https://pdbe.org/6nv8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6nv8 RCSB], [https://www.ebi.ac.uk/pdbsum/6nv8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6nv8 ProSAT]</span></td></tr>
-	~~<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tyrosine_phenol~~-~~lyase Tyrosine phenol~~-~~lyase]~~, ~~with EC number [http://www.brenda~~-~~enzymes.info/php/result_flat.php4?ecno=4.1.99.2 4.1.99.2]~~ </~~span~~></td></tr>	+
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[~~http~~://proteopedia.org/fgij/fg.htm?mol=6nv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nv8 OCA], [~~http~~://pdbe.org/6nv8 PDBe], [~~http~~://www.rcsb.org/pdb/explore.do?structureId=6nv8 RCSB], [~~http~~://www.ebi.ac.uk/pdbsum/6nv8 PDBsum], [~~http~~://prosat.h-its.org/prosat/prosatexe?pdbcode=6nv8 ProSAT]</span></td></tr>	+
	</table>		</table>
		+	== Function ==
		+	[https://www.uniprot.org/uniprot/TPL_CITFR TPL_CITFR]

	==See Also==		==See Also==
Line 15:		Line 15:
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
-	[[Category: ~~Bacterium~~ freundii ~~braak 1928~~]]	+	[[Category: Citrobacter freundii]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
-	~~[[Category: Tyrosine phenol-lyase]]~~	+	[[Category: Phillips RS]]
-	[[Category: Phillips~~, R S]]~~	+
-	~~[[Category: 4-hydroxypyridine]]~~	+
-	~~[[Category: Aminoacrylate intermediate]]~~	+
-	~~[[Category: Lyase]]~~	+
-	~~[[Category: Lyase-lyase inhibitor complex]]~~	+
-	~~[[Category: Pyridoxal-5'-phosphate~~]]	+

OCA at 07:13, 15 April 2020

2020-04-15T07:13:54Z

←Older revision		Revision as of 07:13, 15 April 2020
Line 3:		Line 3:
	<StructureSection load='6nv8' size='340' side='right'caption='[[6nv8]], [[Resolution\|resolution]] 2.26Å' scene=''>		<StructureSection load='6nv8' size='340' side='right'caption='[[6nv8]], [[Resolution\|resolution]] 2.26Å' scene=''>
	== Structural highlights ==		== Structural highlights ==
-	<table><tr><td colspan='2'>[[6nv8]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NV8 OCA]. For a <b>guided tour on the structure components</b> use [http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6NV8 FirstGlance]. <br>	+	<table><tr><td colspan='2'>[[6nv8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_freundii"_braak_1928 "bacterium freundii" braak 1928]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NV8 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6NV8 FirstGlance]. <br>
-	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0JO:2-{[(E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE]AMINO}PROP-2-ENOIC+ACID'>0JO</scene>, <scene name='pdbligand=CQG:pyridin-4-ol'>CQG</scene>, <scene name='pdbligand=DHA:2-AMINO-ACRYLIC+ACID'>DHA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene></td></tr>	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0JO:2-{[(E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE]AMINO}PROP-2-ENOIC+ACID'>0JO</scene>, <scene name='pdbligand=CQG:pyridin-4-ol'>CQG</scene>, <scene name='pdbligand=DHA:2-AMINO-ACRYLIC+ACID'>DHA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene></td></tr>
	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>		<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>
		+	<tr id='gene'><td class="sblockLbl"><b>[[Gene\|Gene:]]</b></td><td class="sblockDat">tpl ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=546 "Bacterium freundii" Braak 1928])</td></tr>
	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tyrosine_phenol-lyase Tyrosine phenol-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.2 4.1.99.2] </span></td></tr>		<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tyrosine_phenol-lyase Tyrosine phenol-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.2 4.1.99.2] </span></td></tr>
-	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://~~oca~~.~~weizmann.ac.il/oca-docs~~/fgij/fg.htm?mol=6nv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nv8 OCA], [http://pdbe.org/6nv8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nv8 RCSB], [http://www.ebi.ac.uk/pdbsum/6nv8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nv8 ProSAT]</span></td></tr>	+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6nv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nv8 OCA], [http://pdbe.org/6nv8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nv8 RCSB], [http://www.ebi.ac.uk/pdbsum/6nv8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nv8 ProSAT]</span></td></tr>
	</table>		</table>
		+
		+	==See Also==
		+	*[[Tyrosinase 3D structures\|Tyrosinase 3D structures]]
	__TOC__		__TOC__
	</StructureSection>		</StructureSection>
		+	[[Category: Bacterium freundii braak 1928]]
	[[Category: Large Structures]]		[[Category: Large Structures]]
	[[Category: Tyrosine phenol-lyase]]		[[Category: Tyrosine phenol-lyase]]

OCA at 04:15, 13 February 2020

2020-02-13T04:15:42Z

←Older revision		Revision as of 04:15, 13 February 2020
Line 1:		Line 1:
-	'''Unreleased structure'''

-	~~The entry 6nv8 is ON HOLD until Paper Publication~~	+	==Perdeuterated tyrosine phenol-lyase from Citrobacter freundii complexed with an aminoacrylate intermediate formed from S-ethyl-L-cysteine and 4-hydroxypyridine==
-		+	<StructureSection load='6nv8' size='340' side='right'caption='[[6nv8]], [[Resolution\|resolution]] 2.26Å' scene=''>
-	~~Authors: Phillips, R.S.~~	+	== Structural highlights ==
-		+	<table><tr><td colspan='2'>[[6nv8]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6NV8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6NV8 FirstGlance]. <br>
-	~~Description: Peerdeuterated~~ tyrosine phenol-lyase from Citrobacter freundii complexed with an aminoacrylate intermediate formed from S-ethyl-L-cysteine and 4-hydroxypyridine	+	</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand\|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0JO:2-{[(E)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE]AMINO}PROP-2-ENOIC+ACID'>0JO</scene>, <scene name='pdbligand=CQG:pyridin-4-ol'>CQG</scene>, <scene name='pdbligand=DHA:2-AMINO-ACRYLIC+ACID'>DHA</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=P33:3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL'>P33</scene></td></tr>
-	[[Category: ~~Unreleased~~ Structures]]	+	<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue\|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=LLP:(2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5-(PHOSPHONOOXYMETHYL)PYRIDIN-4-YL]METHYLIDENEAMINO]HEXANOIC+ACID'>LLP</scene></td></tr>
-	[[Category: Phillips, R.S]]	+	<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Tyrosine_phenol-lyase Tyrosine phenol-lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.2 4.1.99.2] </span></td></tr>
		+	<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6nv8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6nv8 OCA], [http://pdbe.org/6nv8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6nv8 RCSB], [http://www.ebi.ac.uk/pdbsum/6nv8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6nv8 ProSAT]</span></td></tr>
		+	</table>
		+	__TOC__
		+	</StructureSection>
		+	[[Category: Large Structures]]
		+	[[Category: Tyrosine phenol-lyase]]
		+	[[Category: Phillips, R S]]
		+	[[Category: 4-hydroxypyridine]]
		+	[[Category: Aminoacrylate intermediate]]
		+	[[Category: Lyase]]
		+	[[Category: Lyase-lyase inhibitor complex]]
		+	[[Category: Pyridoxal-5'-phosphate]]

OCA at 13:43, 27 February 2019

2019-02-27T13:43:39Z

←Older revision		Revision as of 13:43, 27 February 2019
Line 1:		Line 1:
	'''Unreleased structure'''		'''Unreleased structure'''

-	The entry 6nv8 is ON HOLD	+	The entry 6nv8 is ON HOLD until Paper Publication

	Authors: Phillips, R.S.		Authors: Phillips, R.S.

OCA: Protected "6nv8" [edit=sysop:move=sysop]

2019-02-13T07:48:53Z

Protected "6nv8" [edit=sysop:move=sysop]

←Older revision

Revision as of 07:48, 13 February 2019

OCA: New page: '''Unreleased structure''' The entry 6nv8 is ON HOLD Authors: Phillips, R.S. Description: Peerdeuterated tyrosine phenol-lyase from Citrobacter freundii complexed with an aminoacrylate...

2019-02-13T07:48:51Z

New page: '''Unreleased structure''' The entry 6nv8 is ON HOLD Authors: Phillips, R.S. Description: Peerdeuterated tyrosine phenol-lyase from Citrobacter freundii complexed with an aminoacrylate...

New page

'''Unreleased structure'''

The entry 6nv8 is ON HOLD

Authors: Phillips, R.S.

Description: Peerdeuterated tyrosine phenol-lyase from Citrobacter freundii complexed with an aminoacrylate intermediate formed from S-ethyl-L-cysteine and 4-hydroxypyridine
[[Category: Unreleased Structures]]
[[Category: Phillips, R.S]]